Evidence map›Paper›PMID 26606930›Full record

ArticleMolecular genetics and genomics : MGG2016

Whole-transcriptome analysis of mouse adipose tissue in response to short-term caloric restriction.

Seung-Soo Kim, Kyung-Mi Choi, Soyoung Kim, Taesun Park, In-Cheol Cho, Jae-Won Lee, Cheol-Koo Lee

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
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  7. Review
  8. Knockout of the X-linkedFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
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  10. Article
  11. Review
  12. Article
  13. The Effects of Graded Levels of Calorie Restriction: X. Transcriptomic Responses of Epididymal Adipose Tissue.The journals of gerontology. Series A, Biological sciences and medical sciences · 2018
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Seung-Soo KimDepartment of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, 136-701, Republic of Korea.
Kyung-Mi ChoiDepartment of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, 136-701, Republic of Korea.
Soyoung KimDepartment of Food and Nutrition, Yonsei University, Seoul, 120-749, Republic of Korea.
Taesun ParkDepartment of Food and Nutrition, Yonsei University, Seoul, 120-749, Republic of Korea.
In-Cheol ChoSubtropical Animal Station, National Institute of Animal Science, Jeju, 690-150, Republic of Korea.
Jae-Won LeeDepartment of Statistics, Korea University, Seoul, 136-701, Republic of Korea.
Cheol-Koo LeeDepartment of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, 136-701, Republic of Korea. cklee2005@korea.ac.kr.
Korea University · KRYonsei University · KRNational Institute of Animal Science · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Caloric restriction (CR) has been shown to extend the lifespan of many species by improving cellular function and organismal health. Additionally, fat reduction by CR may play an important role in lengthening lifespan and preventing severe age-related diseases. Interestingly, CR induced the greatest transcriptome change in the epididymal fat of mice in our study. In this transcriptome analysis, we identified and categorized 446 genes that correlated with CR level. We observed down-regulation of several signaling pathways, including insulin/insulin-like growth factor 1 (insulin/IGF-1), epidermal growth factor (EGF), transforming growth factor beta (TGF-β), and canonical wingless-type mouse mammary tumor virus integration site (Wnt). Many genes related to structural features, including extracellular matrix structure, cell adhesion, and the cytoskeleton, were down-regulated, with a strong correlation to the degree of CR. Furthermore, genes related to the cell cycle and adipogenesis were down-regulated. These biological processes are well-identified targets of insulin/IGF-1, EGF, TGF-β, and Wnt signaling. In contrast, genes involved in specific metabolic processes, including the tricarboxylic acid cycle and the electron transport chain were up-regulated. We performed in silico analysis of the promoter sequences of CR-responsive genes and identified two associated transcription factors, Paired-like homeodomain 2 (Pitx2) and Paired box gene 6 (Pax6). Our results suggest that strict regulation of signaling pathways is critical for creating the optimal energy homeostasis to extend lifespan.

Indexed as

Caloric RestrictionAdipose TissueAnimalsEpidermal Growth FactorEye ProteinsGene Expression ProfilingGene Expression RegulationHomeobox Protein PITX2Homeodomain ProteinsLiverLongevityMiceOxidation-ReductionPaired Box Transcription FactorsPAX6 Transcription FactorRepressor ProteinsEpidermal Growth FactorEye ProteinsHomeobox Protein PITX2Homeodomain ProteinsPaired Box Transcription FactorsPax6 protein, mousePAX6 Transcription FactorRepressor ProteinsTranscription FactorsTransforming Growth Factor betaAdipose tissueCaloric restriction strengthMiceTranscription factorTranscriptome

Identifiers

PMID26606930
OpenAlexW2176473766

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.