Evidence map›Paper›PMID 26606420›Full record

ArticlePloS one2015

Genome Analysis of Staphylococcus agnetis, an Agent of Lameness in Broiler Chickens.

Adnan A K Al-Rubaye, M Brian Couger, Sohita Ojha, Jeff F Pummill, Joseph A Koon, Robert F Wideman, Douglas D Rhoads

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 59 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Animals : an open access journal from MDPI · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Electron-Beam-KilledVaccines · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Virulence Mechanisms of Staphylococcal Animal Pathogens.International journal of molecular sciences · 2023
    Review
  15. Review
  16. Article
  17. Article
  18. Review on skeletal disorders caused byThe veterinary quarterly · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Adnan A K Al-RubayeInterdisciplinary Graduate Program in Cell and Molecular Biology, University of Arkansas, Fayetteville, AR, United States of America.
M Brian CougerDepartment of Microbiology, Oklahoma State University, Stillwater, OK, United States of America.
Sohita OjhaInterdisciplinary Graduate Program in Cell and Molecular Biology, University of Arkansas, Fayetteville, AR, United States of America.
Jeff F PummillArkansas High Performance Computing Center, University of Arkansas, Fayetteville, AR, United States of America.
Joseph A KoonDepartment of Biology, Ouachita Baptist University, Arkadelphia, AR, United States of America.
Robert F WidemanInterdisciplinary Graduate Program in Cell and Molecular Biology, University of Arkansas, Fayetteville, AR, United States of America.
Douglas D RhoadsInterdisciplinary Graduate Program in Cell and Molecular Biology, University of Arkansas, Fayetteville, AR, United States of America.
University of Arkansas at Fayetteville · USOklahoma State University · USOuachita Baptist University · US

Funding

Understanding Hesitant AdoptersP20GM103429 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI Lawrence E Cornett, JERRY WARE · 2012 to 2026
$60.9M
VIRULENCE MECHANISMS IN ESCHERICHIA COLIP20RR016460 · NCRR · UNIV OF ARKANSAS FOR MED SCIS · PI HENSLEY, LORI · 2001 to 2011
$33.1M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
Center for Protein Structure and FunctionP30GM103450 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI MILLETT, FRANCIS S · 2012 to 2014
$3.2M
NCATS NIH HHS UL1 TR000039NCATS NIH HHS UL1TR000039NCRR NIH HHS P20 RR016460NCRR NIH HHS P20RR016460NIGMS NIH HHS P20 GM103429NIGMS NIH HHS P20-GM103450NIGMS NIH HHS P30 GM103450
6 · The paper itself

Abstract

Lameness in broiler chickens is a significant animal welfare and financial issue. Lameness can be enhanced by rearing young broilers on wire flooring. We have identified Staphylococcus agnetis as significantly involved in bacterial chondronecrosis with osteomyelitis (BCO) in proximal tibia and femorae, leading to lameness in broiler chickens in the wire floor system. Administration of S. agnetis in water induces lameness. Previously reported in some cases of cattle mastitis, this is the first report of this poorly described pathogen in chickens. We used long and short read next generation sequencing to assemble single finished contigs for the genome and a large plasmid from the chicken pathogen. Comparison of the S. agnetis genome to those of other pathogenic Staphylococci shows that S.agnetis contains a distinct repertoire of virulence determinants. Additionally, the S. agnetis genome has several regions that differ substantially from the genomes of other pathogenic Staphylococci. Comparison of our finished genome to a recent draft genome for a cattle mastitis isolate suggests that future investigations focus on the evolutionary epidemiology of this emerging pathogen of domestic animals.

Indexed as

Genome, BacterialGenomicsAnimalsChickensComputational BiologyGenetic VariationHigh-Throughput Nucleotide SequencingLameness, AnimalMolecular Sequence AnnotationPhylogenyRNA, Ribosomal, 16SStaphylococcusVirulenceRNA, Ribosomal, 16S

Identifiers

PMID26606420
PMCPMC4659636
OpenAlexW2179194215

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.