Evidence map›Paper›PMID 26604030›Full record

ReviewTrends in genetics : TIG2015

Short-Circuiting Gene Regulatory Networks: Origins of B Cell Lymphoma.

Olivia I Koues, Eugene M Oltz, Jacqueline E Payton

Open access · greenAbstract readReview
In one paragraph

Review in Trends in genetics : TIG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Olivia I KouesDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA.
Eugene M OltzDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA. Electronic address: eoltz@wustl.edu.
Jacqueline E PaytonDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA. Electronic address: jpayton@wustl.edu.
Washington University in St. Louis · US

Funding

TARGETING EPIGENOMIC SIGNATURES IN NON-HODGKIN LYMPHOMA FOR NOVEL THERAPEUTICSR01CA156690 · NCI · WASHINGTON UNIVERSITY · PI OLTZ, EUGENE M, PAYTON, JACQUELINE E. · 2010 to 2014
$3.1M
SEQUENCE-SPECIFIC CHROMATIN MODIFIERS; NOVEL PROTEIN THERAPEUTICS FOR B CELL LYMPHOMAR01CA188286 · NCI · WASHINGTON UNIVERSITY · PI OLTZ, EUGENE M, PAYTON, JACQUELINE E. · 2015 to 2019
$1.7M
CHROMATIN-BASED DISCOVERY AND FUNCTION OF NOVEL TCR REGULATORY ELEMENTSR21AI115734 · NIAID · WASHINGTON UNIVERSITY · PI ARTOMOV, MAKSYM, OLTZ, EUGENE M · 2015 to 2016
$419k
CHROMATIN-BASED DISCOVERY OF ILC GENE REGULATORY CIRCUITSR21AI120606 · NIAID · WASHINGTON UNIVERSITY · PI COLONNA, MARCO, OLTZ, EUGENE M · 2015 to 2016
$419k
NCI NIH HHS R01 CA156690NCI NIH HHS R01 CA188286NIAID NIH HHS R21 AI115734NIAID NIH HHS R21 AI120606
6 · The paper itself

Abstract

B cell lymphomas (BCLs) are characterized by widespread deregulation of gene expression compared with their normal B cell counterparts. Recent epigenomic studies defined cis-regulatory elements (REs) whose activities are altered in BCL to drive some of these pathogenic expression changes. During transformation, multiple mechanisms are employed to alter RE activities, including perturbations in the function of chromatin modifiers, which can lead to revision of the B cell epigenome. Inherited and somatic variants also alter RE function via disruption of transcription factor (TF) binding. Aberrant expression of noncoding RNAs (ncRNAs) deregulates genes involved in B cell differentiation via direct repression and post-transcriptional targeting. These discoveries have established epigenetic etiologies for B cell transformation that are being exploited in novel therapeutic approaches.

Indexed as

Gene Regulatory NetworksAnimalsEpigenesis, GeneticHumansLymphoma, B-CellMice

Identifiers

PMID26604030
PMCPMC4674374
OpenAlexW2178039714

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.