Evidence map›Paper›PMID 26604002›Full record

ArticleVirus genes2016

Bufavirus Protoparvovirus in feces of wild rats in China.

Shixing Yang, Dawei Liu, Yan Wang, Fanyong Qu, Yilin He, Zixuan Sun, Quan Shen, Wang Li, Xingli Fu, Xutao Deng and 2 more

Abstract read
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In one paragraph

Article in Virus genes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Lack of molecular evidence of fecal-borne viruses in capybaras from São Paulo state, Brazil, 2018-2020: a minor public health issue.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  9. First report of canine bufavirus in India.Archives of virology · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Global Distribution of Human Protoparvoviruses.Emerging infectious diseases · 2018
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shixing YangSchool of Medicine, Jiangsu University, Zhenjiang, People's Republic of China.
Dawei LiuCollege of Biology and the Environment, Nanjing Forestry University, Nanjing, People's Republic of China.
Yan WangSchool of Medicine, Jiangsu University, Zhenjiang, People's Republic of China.
Fanyong QuDepartment of Interventional Medicine, Yantai Affiliated Hospital of Binzhou Medical University, Yantai, People's Republic of China.
Yilin HeDivision of Acute Infectious Disease Prevention and Control, Taizhou Center for Disease Control and Prevention, Taizhou, People's Republic of China.
Zixuan SunSchool of Medicine, Jiangsu University, Zhenjiang, People's Republic of China.
Quan ShenSchool of Medicine, Jiangsu University, Zhenjiang, People's Republic of China.
Wang LiSchool of Medicine, Jiangsu University, Zhenjiang, People's Republic of China.
Xingli FuSchool of Medicine, Jiangsu University, Zhenjiang, People's Republic of China.
Xutao DengDepartment of Laboratory Medicine, Blood Systems Research Institute, University of California San Francisco, San Francisco, CA, USA.
Wen ZhangSchool of Medicine, Jiangsu University, Zhenjiang, People's Republic of China. z0216wen@yahoo.com.
Eric DelwartDepartment of Laboratory Medicine, Blood Systems Research Institute, University of California San Francisco, San Francisco, CA, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bufavirus (BuV) was first discovered from feces of children with acute diarrhea. It was subsequently detected from several animal species including shrews, bats, and nonhuman primates. In this study, we identified a novel Protoparvovirus, designated RatBuV, from the intestinal contents of wild rats using viral metagenomics. The near complete genome was 4643 nt encoding NS1, VP1, and VP2 proteins. Phylogenetic analysis over the complete genome showed that RatBuV clustered with Mpulungu BuV from shrews. Sequence analysis indicated that the putative protein sequences of NS1, VP1, and VP2 of RatBuV shared identities of 50.6-77.2, 48.3-77.3, and 47.1-78.3 %, respectively, with those of human BuVs, MpBuV, and WUHARV parvovirus, suggesting RatBuV belongs to a new species of Protoparvovirus. Our epidemiologic study indicated that the prevalence rate of RatBuV in the cohort of 40 wild rats is 12.5 % (5/40), which is higher than that of BuV in humans in a previous study.

Indexed as

Amino Acid SequenceAnimalsAnimals, WildChinaFecesGenome, ViralIntestinesMolecular Sequence DataParvoviridae InfectionsParvovirinaePhylogenyRatsSequence AlignmentViral ProteinsViral ProteinsBufavirusGenome structurePhylogentic analysisWild rats

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.