Evidence map›Paper›PMID 26602904›Full record

ArticleJournal of the American Society for Mass Spectrometry2016

Proton Mobility in b₂ Ion Formation and Fragmentation Reactions of Histidine-Containing Peptides.

Carissa R Nelson, Maha T Abutokaikah, Alex G Harrison, Benjamin J Bythell

Abstract read
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In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Leaving Group Effects in a Series of Electrosprayed CJournal of the American Society for Mass Spectrometry · 2019
    Article
  5. Article
  6. Spectroscopic Evidence for Lactam Formation in Terminal Ornithine bJournal of the American Society for Mass Spectrometry · 2019
    Article
  7. Article
  8. Cationized Carbohydrate Gas-Phase Fragmentation Chemistry.Journal of the American Society for Mass Spectrometry · 2017
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Carissa R NelsonDepartment of Chemistry and Biochemistry, University of Missouri, St. Louis, MO, 63121, USA.
Maha T AbutokaikahDepartment of Chemistry and Biochemistry, University of Missouri, St. Louis, MO, 63121, USA.
Alex G HarrisonDepartment of Chemistry, University of Toronto, Toronto, ON, M5S 1A1, Canada.
Benjamin J BythellDepartment of Chemistry and Biochemistry, University of Missouri, St. Louis, MO, 63121, USA. bythellb@umsl.edu.
University of Missouri–St. Louis · USUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A detailed energy-resolved study of the fragmentation reactions of protonated histidine-containing peptides and their b2 ions has been undertaken. Density functional theory calculations were utilized to predict how the fragmentation reactions occur so that we might discern why the mass spectra demonstrated particular energy dependencies. We compare our results to the current literature and to synthetic b2 ion standards. We show that the position of the His residue does affect the identity of the subsequent b2 ion (diketopiperazine versus oxazolone versus lactam) and that energy-resolved CID can distinguish these isomeric products based on their fragmentation energetics. The histidine side chain facilitates every major transformation except trans-cis isomerization of the first amide bond, a necessary prerequisite to diketopiperazine b2 ion formation. Despite this lack of catalyzation, trans-cis isomerization is predicted to be facile. Concomitantly, the subsequent amide bond cleavage reaction is rate-limiting.

Indexed as

DiketopiperazinesDipeptidesHistidineIsomerismLactamsModels, MolecularOxazolonePeptidesProtonsSpectrometry, Mass, Electrospray IonizationDiketopiperazinesDipeptidesHistidineLactamsOxazolonePeptidesProtonsb2 and a2 Ion fragmentationDiketopiperazine structureEnergy-resolved studiesLactam structureOxazolone structure

Identifiers

PMID26602904
OpenAlexW2179382838

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.