Evidence map›Paper›PMID 26601948›Full record

ArticleThe Journal of biological chemistry2016

The Vps27/Hrs/STAM (VHS) Domain of the Signal-transducing Adaptor Molecule (STAM) Directs Associated Molecule with the SH3 Domain of STAM (AMSH) Specificity to Longer Ubiquitin Chains and Dictates the Position of Cleavage.

Nardeen Baiady, Prasanth Padala, Bayan Mashahreh, Einav Cohen-Kfir, Emily A Todd, Kelly E Du Pont, Christopher E Berndsen, Reuven Wiener

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In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Nardeen BaiadyFrom the Department of Biochemistry and Molecular Biology, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel and.
Prasanth PadalaFrom the Department of Biochemistry and Molecular Biology, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel and.
Bayan MashahrehFrom the Department of Biochemistry and Molecular Biology, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel and.
Einav Cohen-KfirFrom the Department of Biochemistry and Molecular Biology, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel and.
Emily A Toddthe Department of Chemistry and Biochemistry, James Madison University, Harrisonburg, Virginia 22807.
Kelly E Du Pontthe Department of Chemistry and Biochemistry, James Madison University, Harrisonburg, Virginia 22807.
Christopher E Berndsenthe Department of Chemistry and Biochemistry, James Madison University, Harrisonburg, Virginia 22807.
Reuven WienerFrom the Department of Biochemistry and Molecular Biology, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel and. Electronic address: reuvenw@ekmd.huji.ac.il.
James Madison University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The deubiquitinating enzyme associated molecule with the SH3 domain of STAM (AMSH) is crucial for the removal of ubiquitin molecules during receptor-mediated endocytosis and lysosomal receptor sorting. AMSH interacts with signal transducing adapter molecule (STAM) 1 or 2, which enhances the activity of AMSH through an unknown mechanism. This stimulation is dependent on the ubiquitin-interacting motif of STAM. Here we investigate the specific mechanism of AMSH stimulation by STAM proteins and the role of the STAM Vps27/Hrs/STAM domain. We show that, in the presence of STAM, the length of the ubiquitin chains affects the apparent cleavage rate. Through measurement of the chain cleavage kinetics, we found that, although the kcat of Lys(63)-linked ubiquitin chain cleavage was comparable for di- and tri-ubiquitin, the Km value was lower for tri-ubiquitin. This increased affinity for longer chains was dependent on the Vps27/Hrs/STAM domain of STAM and required that the substrate ubiquitin chain contain homogenous Lys(63)-linkages. In addition, STAM directed AMSH cleavage toward the distal isopeptide bond in tri-ubiquitin chains. Finally, we generated a structural model of AMSH-STAM to show how the complex binds Lys(63)-linked ubiquitin chains and cleaves at the distal end. These data show how a deubiquitinating enzyme-interacting protein dictates the efficiency and specificity of substrate cleavage.

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid MotifsEndosomal Sorting Complexes Required for TransportHumansKineticsPhosphoproteinsProtein BindingProtein Processing, Post-TranslationalProtein Structure, TertiaryUbiquitinUbiquitin ThiolesteraseAdaptor Proteins, Signal TransducingEndosomal Sorting Complexes Required for TransportPhosphoproteinsSTAM2 protein, humanSTAMBP protein, humanSTAM protein, humanUbiquitinUbiquitin ThiolesteraseAMSHdeubiquitylation (deubiquitination)endosomal sorting complex required for transport (ESCRT)metalloproteasepolyubiquitin chainSTAMubiquitinubiquitin-interacting motifVHS

Identifiers

PMID26601948
PMCPMC4722476
OpenAlexW2254377889

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.