Evidence map›Paper›PMID 26601230›Full record

ArticleScience advances2015

Structural basis of Lewis(b) antigen binding by the Helicobacter pylori adhesin BabA.

Naim Hage, Tina Howard, Chris Phillips, Claire Brassington, Ross Overman, Judit Debreczeni, Paul Gellert, Snow Stolnik, G Sebastiaan Winkler, Franco H Falcone

Abstract read
In one paragraph

Article in Science advances, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Molecular Characterization and Genetic Diversity ofDiagnostics (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Synthesis, DFT, andHeliyon · 2024
    Article
  14. Article
  15. High-Salt Diet ExacerbatesJournal of personalized medicine · 2023
    Review
  16. Article
  17. Article
  18. Review
  19. Antibiotics (Basel, Switzerland) · 2023
    Review
  20. Host Cell Antimicrobial Responses againstInternational journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Naim HageSchool of Pharmacy, University of Nottingham, University Park, Nottingham NG7 2RD, UK.
Tina HowardDiscovery Sciences, Innovative Medicines and Early Development, AstraZeneca R&D, Alderley Park, Cheshire SK10 4TG, UK.
Chris PhillipsDiscovery Sciences, Innovative Medicines and Early Development, AstraZeneca R&D, Darwin Building, 310 Cambridge Science Park, Milton Road, Cambridge CB4 0WG, UK.
Claire BrassingtonDiscovery Sciences, Innovative Medicines and Early Development, AstraZeneca R&D, Alderley Park, Cheshire SK10 4TG, UK.
Ross OvermanDiscovery Sciences, Innovative Medicines and Early Development, AstraZeneca R&D, Alderley Park, Cheshire SK10 4TG, UK.
Judit DebreczeniDiscovery Sciences, Innovative Medicines and Early Development, AstraZeneca R&D, Darwin Building, 310 Cambridge Science Park, Milton Road, Cambridge CB4 0WG, UK.
Paul GellertPharmaceutical Development, AstraZeneca R&D, Charter Way, Macclesfield, Cheshire SK10 2NA, UK.
Snow StolnikSchool of Pharmacy, University of Nottingham, University Park, Nottingham NG7 2RD, UK.
G Sebastiaan WinklerSchool of Pharmacy, University of Nottingham, University Park, Nottingham NG7 2RD, UK.
Franco H FalconeSchool of Pharmacy, University of Nottingham, University Park, Nottingham NG7 2RD, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Helicobacter pylori is a leading cause of peptic ulceration and gastric cancer worldwide. To achieve colonization of the stomach, this Gram-negative bacterium adheres to Lewis(b) (Le(b)) antigens in the gastric mucosa using its outer membrane protein BabA. Structural information for BabA has been elusive, and thus, its molecular mechanism for recognizing Le(b) antigens remains unknown. We present the crystal structure of the extracellular domain of BabA, from H. pylori strain J99, in the absence and presence of Le(b) at 2.0- and 2.1-Å resolutions, respectively. BabA is a predominantly α-helical molecule with a markedly kinked tertiary structure containing a single, shallow Le(b) binding site at its tip within a β-strand motif. No conformational change occurs in BabA upon binding of Le(b), which is characterized by low affinity under acidic [K D (dissociation constant) of ~227 μM] and neutral (K D of ~252 μM) conditions. Binding is mediated by a network of hydrogen bonds between Le(b) Fuc1, GlcNAc3, Fuc4, and Gal5 residues and a total of eight BabA amino acids (C189, G191, N194, N206, D233, S234, S244, and T246) through both carbonyl backbone and side-chain interactions. The structural model was validated through the generation of two BabA variants containing N206A and combined D233A/S244A substitutions, which result in a reduction and complete loss of binding affinity to Le(b), respectively. Knowledge of the molecular basis of Le(b) recognition by BabA provides a platform for the development of therapeutics targeted at inhibiting H. pylori adherence to the gastric mucosa.

Indexed as

adhesinBabAbacterial adhesionHelicobacter pyloriLewisBX-ray crystallography

Identifiers

PMID26601230
PMCPMC4643811

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.