ArticlePloS one2015
Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P. humuli Using RNA Sequencing and Genotyping-By-Sequencing.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed, 33 citations in OpenAlex.
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- Molecular mechanisms of how black barley accumulates higher anthocyanins than blue barley following transcriptomic evaluation and expression analysis of key genes in anthocyanins biosynthesis pathway.Frontiers in plant science · 2025Article
- Identification of Genetic Diversity, Pyrrocidine-Producing Strains and Transmission Modes of EndophyticMicroorganisms · 2022Article
- Genotyping by sequencing suggests overwintering of Peronospora destructor in southwestern Québec, Canada.Molecular plant pathology · 2022Article
- Genetic diversity and population structure of Alternaria species from tomato and potato in North Carolina and Wisconsin.Scientific reports · 2021Article
- QTL mapping of resistance to Pseudoperonospora cubensis clade 1, mating type A2, in Cucumis melo.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- "Jumping Jack": Genomic Microsatellites Underscore the Distinctiveness of Closely RelatedFrontiers in microbiology · 2021Article
- Morphological, Transcriptomic and Hormonal Characterization of Trimonoecious and Subandroecious Pumpkin (International journal of molecular sciences · 2019Article
- Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra.BMC genomics · 2018Article
- Resurgence of cucurbit downy mildew in the United States: Insights from comparative genomic analysis ofEcology and evolution · 2017Article
- Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing.PloS one · 2017Article
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Authors and funding
8 authors at 4 institutions in 1 country.
Funding
Abstract
RNA sequencing (RNA-seq) and genotyping-by-sequencing (GBS) were used for single nucleotide polymorphism (SNP) identification from two economically important obligate plant pathogens, Pseudoperonospora cubensis and P. humuli. Twenty isolates of P. cubensis and 19 isolates of P. humuli were genotyped using RNA-seq and GBS. Principle components analysis (PCA) of each data set showed genetic separation between the two species. Additionally, results supported previous findings that P. cubensis isolates from squash are genetically distinct from cucumber and cantaloupe isolates. A PCA-based procedure was used to identify SNPs correlated with the separation of the two species, with 994 and 4,231 PCA-correlated SNPs found within the RNA-seq and GBS data, respectively. The corresponding unigenes (n = 800) containing these potential species-specific SNPs were then annotated and 135 putative pathogenicity genes, including 3 effectors, were identified. The characterization of genes containing SNPs differentiating these two closely related downy mildew species may contribute to the development of improved detection and diagnosis strategies and improve our understanding of host specificity pathways.
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