Evidence map›Paper›PMID 26599013›Full record

ArticlePloS one2015

RNA-Seq Analysis Reveals MAPKKK Family Members Related to Drought Tolerance in Maize.

Ya Liu, Miaoyi Zhou, Zhaoxu Gao, Wen Ren, Fengling Yang, Hang He, Jiuran Zhao

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 55 citations in OpenAlex.

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  16. Plant Mitogen-Activated Protein Kinase Cascades in Environmental Stresses.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ya LiuMaize Research Center, Beijing Academy of Agricultural and Forestry Science, Beijing 100097, P.R.China.
Miaoyi ZhouMaize Research Center, Beijing Academy of Agricultural and Forestry Science, Beijing 100097, P.R.China.
Zhaoxu GaoSchool of Life Sciences and School of Advanced Agriculture Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, P.R.China.
Wen RenMaize Research Center, Beijing Academy of Agricultural and Forestry Science, Beijing 100097, P.R.China.
Fengling YangMaize Research Center, Beijing Academy of Agricultural and Forestry Science, Beijing 100097, P.R.China.
Hang HeSchool of Life Sciences and School of Advanced Agriculture Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, P.R.China.
Jiuran ZhaoMaize Research Center, Beijing Academy of Agricultural and Forestry Science, Beijing 100097, P.R.China.
Beijing Academy of Agricultural and Forestry Sciences · CNCenter for Life Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitogen-activated protein kinase (MAPK) cascade is an evolutionarily conserved signal transduction pathway that is involved in plant development and stress responses. As the first component of this phosphorelay cascade, mitogen-activated protein kinase kinase kinases (MAPKKKs) act as adaptors linking upstream signaling steps to the core MAPK cascade to promote the appropriate cellular responses; however, the functions of MAPKKKs in maize are unclear. Here, we identified 71 MAPKKK genes, of which 14 were novel, based on a computational analysis of the maize (Zea mays L.) genome. Using an RNA-seq analysis in the leaf, stem and root of maize under well-watered and drought-stress conditions, we identified 5,866 differentially expressed genes (DEGs), including 8 MAPKKK genes responsive to drought stress. Many of the DEGs were enriched in processes such as drought stress, abiotic stimulus, oxidation-reduction, and metabolic processes. The other way round, DEGs involved in processes such as oxidation, photosynthesis, and starch, proline, ethylene, and salicylic acid metabolism were clearly co-expressed with the MAPKKK genes. Furthermore, a quantitative real-time PCR (qRT-PCR) analysis was performed to assess the relative expression levels of MAPKKKs. Correlation analysis revealed that there was a significant correlation between expression levels of two MAPKKKs and relative biomass responsive to drought in 8 inbred lines. Our results indicate that MAPKKKs may have important regulatory functions in drought tolerance in maize.

Indexed as

Adaptation, BiologicalDroughtsBiomassChromosome MappingCluster AnalysisComputational BiologyGene Expression ProfilingGene Expression Regulation, PlantMAP Kinase Kinase KinasesMolecular Sequence AnnotationMultigene FamilyOrgan SpecificityPhylogenySequence Analysis, RNAStress, PhysiologicalTranscriptomeMAP Kinase Kinase Kinases

Identifiers

PMID26599013
PMCPMC4658043
OpenAlexW2175677383

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.