Evidence map›Paper›PMID 26598656›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments.

Pablo Librado, Clio Der Sarkissian, Luca Ermini, Mikkel Schubert, Hákon Jónsson, Anders Albrechtsen, Matteo Fumagalli, Melinda A Yang, Cristina Gamba, Andaine Seguin-Orlando and 30 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 176 citations in OpenAlex.

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  11. Genomic Insights into Post-Domestication Expansion and Selection of Body Size in Ponies.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 17 institutions in 9 countries.

Pablo LibradoCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark;
Clio Der SarkissianCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark;
Luca ErminiCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark;
Mikkel SchubertCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark;ORCID http://orcid.org/0000-0003-2401-9921
Hákon JónssonCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark;
Anders AlbrechtsenBioinformatics Centre, Department of Biology, University of Copenhagen, 2200N Copenhagen, Denmark;
Matteo FumagalliUCL Genetics Institute, Department of Genetics, Evolution, and Environment, University College London, London WC1E 6BT, United Kingdom;
Melinda A YangDepartment of Integrative Biology, University of California, Berkeley, CA 94720-3140;
Cristina GambaCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark;
Andaine Seguin-OrlandoCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark; National High-Throughput DNA Sequencing Centre, University of Copenhagen, 1353K Copenhagen, Denmark;
Cecilie D MortensenNational High-Throughput DNA Sequencing Centre, University of Copenhagen, 1353K Copenhagen, Denmark;
Bent PetersenCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Lyngby, Denmark;
Cindi A HooverDepartment of Energy Joint Genome Institute, Walnut Creek, CA 94598;
Belen Lorente-GaldosUniversitat Pompeu Fabra/Consejo Superior de Investigaciones Cientificas, 08003 Barcelona, Spain; Centro Nacional de Análisis Genómico, 08028 Barcelona, Spain;
Artem NedoluzhkoNational Research Centre Kurchatov Institute, Moscow 123182, Russia;
Eugenia BoulyginaNational Research Centre Kurchatov Institute, Moscow 123182, Russia;
Svetlana TsygankovaNational Research Centre Kurchatov Institute, Moscow 123182, Russia;
Markus NeuditschkoAgroscope, Swiss National Stud Farm, 1580 Avenches, Switzerland;
Vidhya JagannathanInstitute of Genetics, University of Bern, 3001 Bern, Switzerland;
Catherine ThèvesUniversité de Toulouse, University Paul Sabatier, Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, 31000 Toulouse, France;
Ahmed H AlfarhanZoology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia;
Saleh A AlquraishiZoology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia;
Khaled A S Al-RasheidZoology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia;
Thomas Sicheritz-PontenCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Lyngby, Denmark;ORCID http://orcid.org/0000-0001-6615-1141
Ruslan PopovYakutian Research Institute of Agriculture, 677002 Yakutsk, Sakha, Russia;
Semyon GrigorievNorth-Eastern Federal University, 677000 Yakutsk, Russia;
Anatoly N AlekseevNorth-Eastern Federal University, 677000 Yakutsk, Russia;
Edward M RubinDepartment of Energy Joint Genome Institute, Walnut Creek, CA 94598;
Molly McCueCollege of Veterinary Medicine, University of Minnesota, St. Paul, MN 55108;
Stefan RiederAgroscope, Swiss National Stud Farm, 1580 Avenches, Switzerland;
Tosso LeebInstitute of Genetics, University of Bern, 3001 Bern, Switzerland;
Alexei TikhonovZoological Institute of Russian Academy of Sciences, 199034 Saint-Petersburg, Russia;
Eric CrubézyUniversité de Toulouse, University Paul Sabatier, Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, 31000 Toulouse, France;
Montgomery SlatkinDepartment of Integrative Biology, University of California, Berkeley, CA 94720-3140;
Tomas Marques-BonetUniversitat Pompeu Fabra/Consejo Superior de Investigaciones Cientificas, 08003 Barcelona, Spain; Centro Nacional de Análisis Genómico, 08028 Barcelona, Spain;
Rasmus NielsenCenter for Theoretical Evolutionary Genomics, University of California, Berkeley, CA 94720-3140;
Eske WillerslevCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark;
Juha KantanenBiotechnology and Food Research, Agrifood Research Finland, 31600 Jokioinen, Finland; Department of Biology, University of Eastern Finland, 70211 Kuopio, Finland.
Egor ProkhortchoukNational Research Centre Kurchatov Institute, Moscow 123182, Russia;
Ludovic OrlandoCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark; Université de Toulouse, University Paul Sabatier, Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, 31000 Toulouse, France; lorlando@snm.ku.dk.
University of Copenhagen · DKKurchatov Institute · RUKing Saud University · SAAgroscope · CHCentre National de la Recherche Scientifique · FRConsejo Superior de Investigaciones Científicas · ESIntegra (United States) · USLos Alamos National Laboratory · USNorth-Eastern Federal University · RUTechnical University of Denmark · DKUniversity of Bern · CHEvolutionary Genomics (United States) · USUniversity College London · GBUniversity of Eastern Finland · FIUniversity of Minnesota · USYakut Scientific Research Institute of Agriculture · RUZoological Institute · RU

Funding

MODELS OF COMPLEX GENETIC SYSTEMSR01GM040282 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SLATKIN, MONTGOMERY WILSON · 1988 to 2017
$4.4M
NIGMS NIH HHS R01 GM040282NIGMS NIH HHS R01-GM40282
6 · The paper itself

Abstract

Yakutia, Sakha Republic, in the Siberian Far East, represents one of the coldest places on Earth, with winter record temperatures dropping below -70 °C. Nevertheless, Yakutian horses survive all year round in the open air due to striking phenotypic adaptations, including compact body conformations, extremely hairy winter coats, and acute seasonal differences in metabolic activities. The evolutionary origins of Yakutian horses and the genetic basis of their adaptations remain, however, contentious. Here, we present the complete genomes of nine present-day Yakutian horses and two ancient specimens dating from the early 19th century and ∼5,200 y ago. By comparing these genomes with the genomes of two Late Pleistocene, 27 domesticated, and three wild Przewalski's horses, we find that contemporary Yakutian horses do not descend from the native horses that populated the region until the mid-Holocene, but were most likely introduced following the migration of the Yakut people a few centuries ago. Thus, they represent one of the fastest cases of adaptation to the extreme temperatures of the Arctic. We find cis-regulatory mutations to have contributed more than nonsynonymous changes to their adaptation, likely due to the comparatively limited standing variation within gene bodies at the time the population was founded. Genes involved in hair development, body size, and metabolic and hormone signaling pathways represent an essential part of the Yakutian horse adaptive genetic toolkit. Finally, we find evidence for convergent evolution with native human populations and woolly mammoths, suggesting that only a few evolutionary strategies are compatible with survival in extremely cold environments.

Indexed as

Cold TemperatureAdaptation, PhysiologicalAnimalsArctic RegionsEvolution, MolecularGenomeHorsesSiberiaadaptationancient genomicshorsepopulation discontinuityregulatory changes

Identifiers

PMID26598656
PMCPMC4687531
OpenAlexW2174026811

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.