Evidence map›Paper›PMID 26598654›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Ion-binding properties of a K+ channel selectivity filter in different conformations.

Shian Liu, Paul J Focke, Kimberly Matulef, Xuelin Bian, Pierre Moënne-Loccoz, Francis I Valiyaveetil, Steve W Lockless

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Mechanism of external K+ sensitivity of KCNQ1 channels.The Journal of general physiology · 2023
    Article
  4. Article
  5. Article
  6. Structures of Gating Intermediates in a KJournal of molecular biology · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Comparison of KHandbook of experimental pharmacology · 2021
    Article
  12. KScience advances · 2020
    Article
  13. Modulation of Function, Structure and Clustering of KInternational journal of molecular sciences · 2020
    Review
  14. Probing allosteric coupling in a constitutively open mutant of the ion channel KcsA using solid-state NMR.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Conduction through a narrow inward-rectifier KThe Journal of general physiology · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Shian LiuDepartment of Biology, Texas A&M University, College Station, TX 77843;
Paul J FockeProgram in Chemical Biology, Department of Physiology and Pharmacology, Oregon Health and Science University, Portland, OR 97239;
Kimberly MatulefProgram in Chemical Biology, Department of Physiology and Pharmacology, Oregon Health and Science University, Portland, OR 97239;
Xuelin BianDepartment of Biology, Texas A&M University, College Station, TX 77843;
Pierre Moënne-LoccozDivision of Environmental and Biomolecular Systems, Institute of Environmental Health, Oregon Health and Science University, Portland, OR 97239;
Francis I ValiyaveetilProgram in Chemical Biology, Department of Physiology and Pharmacology, Oregon Health and Science University, Portland, OR 97239;
Steve W LocklessDepartment of Biology, Texas A&M University, College Station, TX 77843; Texas A&M Institute for Neuroscience, Texas A&M University, College Station, TX 77843 lockless@bio.tamu.edu.
Oregon Health & Science University · USTexas A&M University · US

Funding

Probing functional mechanisms in K+ channels using unnatural mutagenesisR01GM087546 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI VALIYAVEETIL, FRANCIS · 2009 to 2022
$4.0M
NIGMS NIH HHS GM087546NIGMS NIH HHS R01 GM087546
6 · The paper itself

Abstract

K(+) channels are membrane proteins that selectively conduct K(+) ions across lipid bilayers. Many voltage-gated K(+) (KV) channels contain two gates, one at the bundle crossing on the intracellular side of the membrane and another in the selectivity filter. The gate at the bundle crossing is responsible for channel opening in response to a voltage stimulus, whereas the gate at the selectivity filter is responsible for C-type inactivation. Together, these regions determine when the channel conducts ions. The K(+) channel from Streptomyces lividians (KcsA) undergoes an inactivation process that is functionally similar to KV channels, which has led to its use as a practical system to study inactivation. Crystal structures of KcsA channels with an open intracellular gate revealed a selectivity filter in a constricted conformation similar to the structure observed in closed KcsA containing only Na(+) or low [K(+)]. However, recent work using a semisynthetic channel that is unable to adopt a constricted filter but inactivates like WT channels challenges this idea. In this study, we measured the equilibrium ion-binding properties of channels with conductive, inactivated, and constricted filters using isothermal titration calorimetry (ITC). EPR spectroscopy was used to determine the state of the intracellular gate of the channel, which we found can depend on the presence or absence of a lipid bilayer. Overall, we discovered that K(+) ion binding to channels with an inactivated or conductive selectivity filter is different from K(+) ion binding to channels with a constricted filter, suggesting that the structures of these channels are different.

Indexed as

DetergentsIon Channel GatingLipid BilayersPotassiumProtein ConformationDetergentsLipid BilayersPotassiumelectron paramagnetic resonance spectroscopyinactivationion bindingisothermal titration calorimetryK+ channel

Identifiers

PMID26598654
PMCPMC4679001
OpenAlexW2177699213

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.