Evidence map›Paper›PMID 26598231›Full record

ArticleNature communications2015

Gekko japonicus genome reveals evolution of adhesive toe pads and tail regeneration.

Yan Liu, Qian Zhou, Yongjun Wang, Longhai Luo, Jian Yang, Linfeng Yang, Mei Liu, Yingrui Li, Tianmei Qian, Yuan Zheng and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 185 citations in OpenAlex.

  1. Article
  2. Review
  3. Macrophages orchestrate tail regeneration in lizardsFrontiers in cell and developmental biology · 2026
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 3 institutions in 1 country.

Yan LiuJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Qian ZhouBeijing Genomics Institute, BGI-Shenzhen, Shenzhen 518083, China.
Yongjun WangJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Longhai LuoBeijing Genomics Institute, BGI-Shenzhen, Shenzhen 518083, China.
Jian YangJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Linfeng YangBeijing Genomics Institute, BGI-Shenzhen, Shenzhen 518083, China.
Mei LiuJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Yingrui LiBeijing Genomics Institute, BGI-Shenzhen, Shenzhen 518083, China.
Tianmei QianJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Yuan ZhengBeijing Genomics Institute, BGI-Shenzhen, Shenzhen 518083, China.
Meiyuan LiJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Jiang LiBeijing Genomics Institute, BGI-Shenzhen, Shenzhen 518083, China.
Yun GuJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Zujing HanBeijing Genomics Institute, BGI-Shenzhen, Shenzhen 518083, China.
Man XuJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Yingjie WangJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Changlai ZhuJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Bin YuJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Yumin YangJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Fei DingJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Jianping JiangChengdu institute of biology, Chinese Academy of Sciences, Chengdu 610041, China.
Huanming YangBeijing Genomics Institute, BGI-Shenzhen, Shenzhen 518083, China.
Xiaosong GuJS Key Laboratory of Neuroregeneration, Co-innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China.
Nantong University · CNBGI Group (China) · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reptiles are the most morphologically and physiologically diverse tetrapods, and have undergone 300 million years of adaptive evolution. Within the reptilian tetrapods, geckos possess several interesting features, including the ability to regenerate autotomized tails and to climb on smooth surfaces. Here we sequence the genome of Gekko japonicus (Schlegel's Japanese Gecko) and investigate genetic elements related to its physiology. We obtain a draft G. japonicus genome sequence of 2.55 Gb and annotated 22,487 genes. Comparative genomic analysis reveals specific gene family expansions or reductions that are associated with the formation of adhesive setae, nocturnal vision and tail regeneration, as well as the diversification of olfactory sensation. The obtained genomic data provide robust genetic evidence of adaptive evolution in reptiles.

Indexed as

Evolution, MolecularGenomeAlligators and CrocodilesAnimalsBase SequenceBiological EvolutionBoidaeLizardsMolecular Sequence DataNight VisionPhylogenyRegenerationSmellTailToesTurtles

Identifiers

PMID26598231
PMCPMC4673495
OpenAlexW2178090043

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.