Evidence map›Paper›PMID 26597707›Full record

ArticleScientific reports2015

Conversion of a light-driven proton pump into a light-gated ion channel.

A Vogt, Y Guo, S P Tsunoda, S Kateriya, M Elstner, P Hegemann

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Modified Rhodopsins FromFrontiers in molecular biosciences · 2021
    Article
  8. Article
  9. Multifaceted aspects of charge transfer.Physical chemistry chemical physics : PCCP · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Monod-Wyman-Changeux Analysis of Ligand-Gated Ion Channel Mutants.The journal of physical chemistry. B · 2017
    Article
  15. Review
  16. A natural light-driven inward proton pump.Nature communications · 2016
    Article
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

A VogtInstitute of Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, 10115 Berlin, Germany.
Y GuoInstitute of Physical Chemistry, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany.
S P TsunodaInstitute of Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, 10115 Berlin, Germany.
S KateriyaDepartment of Biochemistry, University of Delhi South Campus, New Delhi, India.
M ElstnerInstitute of Physical Chemistry, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany.
P HegemannInstitute of Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, 10115 Berlin, Germany.
Humboldt-Universität zu Berlin · DEKarlsruhe Institute of Technology · DEUniversity of Delhi · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interest in microbial rhodopsins with ion pumping activity has been revitalized in the context of optogenetics, where light-driven ion pumps are used for cell hyperpolarization and voltage sensing. We identified an opsin-encoding gene (CsR) in the genome of the arctic alga Coccomyxa subellipsoidea C-169 that can produce large photocurrents in Xenopus oocytes. We used this property to analyze the function of individual residues in proton pumping. Modification of the highly conserved proton shuttling residue R83 or its interaction partner Y57 strongly reduced pumping power. Moreover, this mutation converted CsR at moderate electrochemical load into an operational proton channel with inward or outward rectification depending on the amino acid substitution. Together with molecular dynamics simulations, these data demonstrate that CsR-R83 and its interacting partner Y57 in conjunction with water molecules forms a proton shuttle that blocks passive proton flux during the dark-state but promotes proton movement uphill upon illumination.

Indexed as

AnimalsChlorophytaHEK293 CellsHumansHydrogen-Ion ConcentrationMembrane PotentialsMolecular Dynamics SimulationOocytesPlant ProteinsProtein EngineeringProton PumpsRhodopsinXenopus laevisPlant ProteinsProton PumpsRhodopsin

Identifiers

PMID26597707
PMCPMC4657025
OpenAlexW2398504273

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.