Evidence map›Paper›PMID 26596932›Full record

ArticleMolecular systems biology2015

A synthetic growth switch based on controlled expression of RNA polymerase.

Jérôme Izard, Cindy D C Gomez Balderas, Delphine Ropers, Stephan Lacour, Xiaohu Song, Yifan Yang, Ariel B Lindner, Johannes Geiselmann, Hidde de Jong

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
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  7. How total mRNA influences cell growth.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  15. Cybergenetic control of microbial community composition.Frontiers in bioengineering and biotechnology · 2022
    Review
  16. Review
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  18. A unifying autocatalytic network-based framework for bacterial growth laws.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Article
  20. Decoupling Growth and Protein Production in CHO Cells: A Targeted Approach.Frontiers in bioengineering and biotechnology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Jérôme IzardUniversité Grenoble Alpes, Laboratoire Interdisciplinaire de Physique (CNRS UMR 5588), Saint Martin d'Hères, France INRIA, Grenoble - Rhône-Alpes research center, Saint Ismier, France.
Cindy D C Gomez BalderasUniversité Grenoble Alpes, Laboratoire Interdisciplinaire de Physique (CNRS UMR 5588), Saint Martin d'Hères, France INRIA, Grenoble - Rhône-Alpes research center, Saint Ismier, France.
Delphine RopersINRIA, Grenoble - Rhône-Alpes research center, Saint Ismier, France.
Stephan LacourUniversité Grenoble Alpes, Laboratoire Interdisciplinaire de Physique (CNRS UMR 5588), Saint Martin d'Hères, France INRIA, Grenoble - Rhône-Alpes research center, Saint Ismier, France.
Xiaohu SongCenter for Research and Interdisciplinarity, INSERM U1001, Medicine Faculty, Site Cochin Port-Royal, University Paris Descartes, Paris, France.
Yifan YangCenter for Research and Interdisciplinarity, INSERM U1001, Medicine Faculty, Site Cochin Port-Royal, University Paris Descartes, Paris, France.
Ariel B LindnerCenter for Research and Interdisciplinarity, INSERM U1001, Medicine Faculty, Site Cochin Port-Royal, University Paris Descartes, Paris, France.
Johannes GeiselmannUniversité Grenoble Alpes, Laboratoire Interdisciplinaire de Physique (CNRS UMR 5588), Saint Martin d'Hères, France INRIA, Grenoble - Rhône-Alpes research center, Saint Ismier, France hans.geiselmann@ujf-grenoble.fr hidde.de-jong@inria.fr.
Hidde de JongINRIA, Grenoble - Rhône-Alpes research center, Saint Ismier, France hans.geiselmann@ujf-grenoble.fr hidde.de-jong@inria.fr.
Center for Research and Interdisciplinarity · FRCentre Inria de l'Université Grenoble Alpes · FRUniversité Grenoble Alpes · FRCentre National de la Recherche Scientifique · FRLaboratoire Interdisciplinaire de Physique · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability to control growth is essential for fundamental studies of bacterial physiology and biotechnological applications. We have engineered an Escherichia coli strain in which the transcription of a key component of the gene expression machinery, RNA polymerase, is under the control of an inducible promoter. By changing the inducer concentration in the medium, we can adjust the RNA polymerase concentration and thereby switch bacterial growth between zero and the maximal growth rate supported by the medium. We show that our synthetic growth switch functions in a medium-independent and reversible way, and we provide evidence that the switching phenotype arises from the ultrasensitive response of the growth rate to the concentration of RNA polymerase. We present an application of the growth switch in which both the wild-type E. coli strain and our modified strain are endowed with the capacity to produce glycerol when growing on glucose. Cells in which growth has been switched off continue to be metabolically active and harness the energy gain to produce glycerol at a twofold higher yield than in cells with natural control of RNA polymerase expression. Remarkably, without any further optimization, the improved yield is close to the theoretical maximum computed from a flux balance model of E. coli metabolism. The proposed synthetic growth switch is a promising tool for gaining a better understanding of bacterial physiology and for applications in synthetic biology and biotechnology.

Indexed as

DNA-Directed RNA PolymerasesEscherichia coliGene Expression Regulation, BacterialSynthetic BiologySystems BiologyDNA-Directed RNA Polymerasesbacterial physiologybiotechnologygrowthRNA polymerasesynthetic biology

Identifiers

PMID26596932
PMCPMC4670729
OpenAlexW2175978653

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.