Evidence map›Paper›PMID 26595531›Full record

ArticleJournal of proteome research2015

Mass Spectrometry and Antibody-Based Characterization of Blood Vessels from Brachylophosaurus canadensis.

Timothy P Cleland, Elena R Schroeter, Leonid Zamdborg, Wenxia Zheng, Ji Eun Lee, John C Tran, Marshall Bern, Michael B Duncan, Valerie S Lebleu, Dorothy R Ahlf and 4 more

Abstract readComparative Study
In one paragraph

Article in Journal of proteome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 74 citations in OpenAlex.

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  7. Paleoproteomics.Chemical reviews · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Timothy P Cleland
Elena R Schroeter
Leonid ZamdborgDepartment of Chemistry, University of Illinois , Urbana, Illinois 61801, United States.
Wenxia Zheng
Ji Eun LeeDepartment of Chemistry, University of Illinois , Urbana, Illinois 61801, United States.
John C TranDepartments of Chemistry, Molecular Biosciences and the Proteomics Center of Excellence, Northwestern University , Evanston, Illinois 60208, United States.
Marshall BernProtein Metrics , San Carlos, California 94070, United States.
Michael B DuncanDivision of Matrix Biology, Beth Israel Deaconess Medical Center , Boston, Massachusetts 02115, United States.
Valerie S LebleuDivision of Matrix Biology, Beth Israel Deaconess Medical Center , Boston, Massachusetts 02115, United States.
Dorothy R AhlfDepartments of Chemistry, Molecular Biosciences and the Proteomics Center of Excellence, Northwestern University , Evanston, Illinois 60208, United States.
Paul M ThomasDepartments of Chemistry, Molecular Biosciences and the Proteomics Center of Excellence, Northwestern University , Evanston, Illinois 60208, United States.
Raghu KalluriDivision of Matrix Biology, Beth Israel Deaconess Medical Center , Boston, Massachusetts 02115, United States.
Neil L KelleherDepartments of Chemistry, Molecular Biosciences and the Proteomics Center of Excellence, Northwestern University , Evanston, Illinois 60208, United States.
Mary H SchweitzerNorth Carolina Museum of Natural Sciences , Raleigh, North Carolina 27601, United States.
Northwestern University · USBeth Israel Deaconess Medical Center · USNorth Carolina State University · USUniversity of Illinois Urbana-Champaign · USNorth Carolina Museum of Natural Sciences · USProtein Metrics (United States) · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Stromal Regulation of Bone MetastasisU54CA163191 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KALLURI, RAGHU · 2011 to 2015
$4.8M
TYPE IV COLLAGEN IN ALPORT SYNDROME PATHOGENESISR01DK055001 · NIDDK · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KALLURI, RAGHU · 1999 to 2014
$4.3M
Eukaryotic Post-Translational ModificationsR01GM067193 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KELLEHER, NEIL L · 2003 to 2015
$4.0M
TRAINING PROGRAM IN CANCER BIOLOGYT32CA081156 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BALK, STEVEN P. · 2000 to 2011
$2.9M
Targeting Pericytes in CancerR01CA155370 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KALLURI, RAGHU · 2011 to 2015
$1.7M
Role of Fibroblasts in CancerR01CA125550 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI KALLURI, RAGHU · 2008 to 2010
$1.1M
Algorithms and Software for Protein-Family De Novo SequencingR21GM094557 · NIGMS · PALO ALTO RESEARCH CENTER · PI BERN, MARSHALL WAYNE · 2010 to 2011
$557k
NCI NIH HHS 5 T32 CA081156-08NCI NIH HHS CA125550NCI NIH HHS CA155370NCI NIH HHS CA163191NCI NIH HHS R01 CA125550NCI NIH HHS R01 CA155370NCI NIH HHS T32 CA081156NCI NIH HHS U54 CA163191NIDDK NIH HHS DK55001NIDDK NIH HHS DK81976NIDDK NIH HHS R01 DK055001NIGMS NIH HHS GM067193NIGMS NIH HHS R01 GM067193NIGMS NIH HHS R21 GM094557NIGMS NIH HHS R21GM94557
6 · The paper itself

Abstract

Structures similar to blood vessels in location, morphology, flexibility, and transparency have been recovered after demineralization of multiple dinosaur cortical bone fragments from multiple specimens, some of which are as old as 80 Ma. These structures were hypothesized to be either endogenous to the bone (i.e., of vascular origin) or the result of biofilm colonizing the empty osteonal network after degradation of original organic components. Here, we test the hypothesis that these structures are endogenous and thus retain proteins in common with extant archosaur blood vessels that can be detected with high-resolution mass spectrometry and confirmed by immunofluorescence. Two lines of evidence support this hypothesis. First, peptide sequencing of Brachylophosaurus canadensis blood vessel extracts is consistent with peptides comprising extant archosaurian blood vessels and is not consistent with a bacterial, cellular slime mold, or fungal origin. Second, proteins identified by mass spectrometry can be localized to the tissues using antibodies specific to these proteins, validating their identity. Data are available via ProteomeXchange with identifier PXD001738.

Indexed as

ActinsAmino Acid SequenceAnimalsBlood VesselsBone and BonesChickensDinosaursFluorescent Antibody TechniqueFossilsMass SpectrometryModels, BiologicalMolecular Sequence DataMyosinsPhylogenyProteomicsSequence AlignmentActinsMyosinsTropomyosinTubulinactinblood vesselsBrachylophosaurus canadensiscytoskeletondinosaurmyosinpreservationtaphonomytropomyosintubulin

Identifiers

PMID26595531
PMCPMC4768904
OpenAlexW2210180552

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.