Evidence map›Paper›PMID 26595195›Full record

ArticleBiomacromolecules2016

Rapid Exchange Between Free and Bound States in RNA-Dendrimer Polyplexes: Implications on the Mechanism of Delivery and Release.

Anisha Shakya, Casey A Dougherty, Yi Xue, Hashim M Al-Hashimi, Mark M Banaszak Holl

Abstract read
In one paragraph

Article in Biomacromolecules, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. RNA Dynamics by NMR Spectroscopy.Chembiochem : a European journal of chemical biology · 2019
    Review
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Anisha ShakyaDepartment of Chemistry, University of Michigan , Ann Arbor, Michigan 48109-1055, United States.
Casey A DoughertyDepartment of Chemistry, University of Michigan , Ann Arbor, Michigan 48109-1055, United States.
Yi XueDepartment of Biochemistry and Chemistry, Duke University Medical Center , Durham, North Carolina 27710, United States.
Hashim M Al-HashimiDepartment of Biochemistry and Chemistry, Duke University Medical Center , Durham, North Carolina 27710, United States.
Mark M Banaszak HollDepartment of Chemistry, University of Michigan , Ann Arbor, Michigan 48109-1055, United States.

Funding

The Center for HIV RNA Studies (CRNA)P50GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAYIE, KWAKU · 2012 to 2016
$21.7M
Role of DNA structural dynamics in mutagenesis and oncogenesisR01GM089846 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Hashim M Al-Hashimi · 2010 to 2026
$5.2M
The Role of Cell Membrane Disruption in Non-Viral Vector Oligonucleotide DeliveryR01EB005028 · NIBIB · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BANASZAK HOLL, MARK M · 2006 to 2013
$2.8M
Targeting HIV-1 Regulatory RNA ElementsR01AI066975 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI AL-HASHIMI, HASHIM M · 2005 to 2014
$2.6M
NIAID NIH HHS R01 AI066975NIAID NIH HHS R01 AI087463-01NIBIB NIH HHS R01 EB005028NIBIB NIH HHS R01EB005028NIGMS NIH HHS P50 GM103297NIGMS NIH HHS R01 GM089846
6 · The paper itself

Abstract

A combination of solution NMR, dynamic light scattering (DLS), and fluorescence quenching assays were employed to obtain insights into the dynamics and structural features of a polyplex system consisting of HIV-1 transactivation response element (TAR) and PEGylated generation 5 poly(amidoamine) dendrimer (G5-PEG). NMR chemical shift mapping and (13)C spin relaxation based dynamics measurements depict the polyplex system as a highly dynamic assembly where the RNA, with its local structure and dynamics preserved, rapidly exchanges (<ms) between free and polyplex-bound forms, at least for the probed N/P ratios. Recovery of quenched fluorescence shows that RNA in the polyplex can be competitively exchanged over a wide range of amine to phosphate (N/P) charge ratios. The rapid exchange between free and bound forms may contribute to the mechanism by which RNA is released into the cell upon delivery while being protected by the polyplex environment from immediate degradation by nucleases.

Indexed as

DendrimersHIV-1Magnetic Resonance SpectroscopyPolyaminesPolyethylene GlycolsResponse ElementsRNATransfectionDendrimersPoly(amidoamine)PolyaminesPolyethylene GlycolsRNA

Identifiers

PMID26595195
PMCPMC5070374

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.