ArticleStandards in genomic sciences2015
Complete genome sequence of Novosphingobium pentaromativorans US6-1(T).
Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- Impacts of coniferous bark-derived organic soil amendments on microbial communities in arable soil - a microcosm study.FEMS microbiology ecology · 2023Article
- Metagenome analyses of microbial population in geotextile fabrics used in permeable reactor barriers for toluene biodegradation.3 Biotech · 2023Article
- PahT regulates carbon fluxes in Novosphingobium sp. HR1a and influences its survival in soil and rhizospheres.Environmental microbiology · 2021Article
- Transcriptome Analysis ofInternational journal of molecular sciences · 2018Article
- Comparative Genomics of DegradativeFrontiers in microbiology · 2018Article
- Draft Genome Sequence ofGenome announcements · 2017Article
- Potential Biotechnological Strategies for the Cleanup of Heavy Metals and Metalloids.Frontiers in plant science · 2016Review
- Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the GenusmSystemsArticle
Corrections and comments
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Authors and funding
4 authors.
Funding
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Abstract
Novosphingobium pentaromativorans US6-1(T) is a species in the family Sphingomonadaceae. According to the phylogenetic analysis based on 16S rRNA gene sequence of the N. pentaromativorans US6-1(T) and nine genome-sequenced strains in the genus Novosphingobium, the similarity ranged from 93.9 to 99.9 % and the highest similarity was found with Novosphingobium sp. PP1Y (99.9 %), whereas the ANI value based on genomes ranged from 70.9 to 93 % and the highest value was 93 %. This microorganism was isolated from muddy coastal bay sediments where the environment is heavily polluted by polycyclic aromatic hydrocarbons (PAHs). It was previously shown to be capable of degrading multiple PAHs, including benzo[a]pyrene. To further understand the PAH biodegradation pathways the previous draft genome of this microorganism was revised to obtain a complete genome using Illumina MiSeq and PacBio platform. The genome of strain US6-1(T) consists of 5,457,578 bp, which includes the 3,979,506 bp chromosome and five megaplasmids. It comprises 5110 protein-coding genes and 82 RNA genes. Here, we provide an analysis of the complete genome sequence which enables the identification of new characteristics of this strain.
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