Evidence map›Paper›PMID 26593974›Full record

ArticleNature communications2015

Control of developmentally primed erythroid genes by combinatorial co-repressor actions.

Ralph Stadhouders, Alba Cico, Tharshana Stephen, Supat Thongjuea, Petros Kolovos, H Irem Baymaz, Xiao Yu, Jeroen Demmers, Karel Bezstarosti, Alex Maas and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Transcription Factor TAL1 in Erythropoiesis.Advances in experimental medicine and biology · 2024
    Review
  16. An enhancer RNA recruits MLL1 to regulate transcription ofbioRxiv : the preprint server for biology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Ralph StadhoudersDepartment of Cell Biology, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Alba CicoInserm UMR967, CEA/DSV/iRCM, Laboratory of Molecular Hematopoiesis, Université Paris-Saclay, 92265 Fontenay-aux-Roses, France.
Tharshana StephenInserm UMR967, CEA/DSV/iRCM, Laboratory of Molecular Hematopoiesis, Université Paris-Saclay, 92265 Fontenay-aux-Roses, France.
Supat ThongjueaComputational Biology Unit, Bergen Center for Computational Science, N-5008 Bergen, Norway.
Petros KolovosDepartment of Cell Biology, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
H Irem BaymazDepartment of Cell Biology, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Xiao YuDepartment of Cell Biology, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Jeroen DemmersDepartment of Proteomics, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Karel BezstarostiDepartment of Proteomics, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Alex MaasDepartment of Cell Biology, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Vilma BarrocaCEA/DSV/iRCM/SCSR, Université Paris-Saclay, 92265 Fontenay-aux-Roses, France.
Christel KockxCenter for Biomics, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Zeliha OzgurCenter for Biomics, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Wilfred van IjckenCenter for Biomics, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-0421-8301
Marie-Laure ArcangeliInserm UMR967, CEA/DSV/iRCM, Laboratory of Hematopoietic and Leukemic Stem cells, Université Paris-Saclay, 92265 Fontenay-aux-Roses, France.
Charlotte Andrieu-SolerInserm UMR967, CEA/DSV/iRCM, Laboratory of Molecular Hematopoiesis, Université Paris-Saclay, 92265 Fontenay-aux-Roses, France.
Boris LenhardDepartment of Molecular Sciences, Faculty of Medicine, MRC Clinical Sciences Centre, Institute of Clinical Sciences, Imperial College London, London W12 0NN, UK.ORCID http://orcid.org/0000-0002-1114-1509
Frank GrosveldDepartment of Cell Biology, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.
Eric SolerDepartment of Cell Biology, Erasmus Medical Center, 3015CN Rotterdam, The Netherlands.

Funding

Medical Research Council MC_UP_1102/1
6 · The paper itself

Abstract

How transcription factors (TFs) cooperate within large protein complexes to allow rapid modulation of gene expression during development is still largely unknown. Here we show that the key haematopoietic LIM-domain-binding protein-1 (LDB1) TF complex contains several activator and repressor components that together maintain an erythroid-specific gene expression programme primed for rapid activation until differentiation is induced. A combination of proteomics, functional genomics and in vivo studies presented here identifies known and novel co-repressors, most notably the ETO2 and IRF2BP2 proteins, involved in maintaining this primed state. The ETO2-IRF2BP2 axis, interacting with the NCOR1/SMRT co-repressor complex, suppresses the expression of the vast majority of archetypical erythroid genes and pathways until its decommissioning at the onset of terminal erythroid differentiation. Our experiments demonstrate that multimeric regulatory complexes feature a dynamic interplay between activating and repressing components that determines lineage-specific gene expression and cellular differentiation.

Indexed as

Gene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsBase SequenceCarrier ProteinsDNA-Binding ProteinsErythroid CellsErythropoiesisHumansLIM Domain ProteinsMiceMolecular Sequence DataNuclear ProteinsNuclear Receptor Co-Repressor 1Nuclear Receptor Co-Repressor 2Repressor ProteinsCarrier ProteinsCBFA2T3 protein, humanDNA-Binding ProteinsIRF2BP2 protein, humanLDB1 protein, humanLIM Domain ProteinsNCOR1 protein, humanNCOR2 protein, humanNuclear ProteinsNuclear Receptor Co-Repressor 1Nuclear Receptor Co-Repressor 2Repressor ProteinsTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID26593974
PMCPMC4673834

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.