Evidence map›Paper›PMID 26593892›Full record

ReviewMolecules (Basel, Switzerland)2015

Relationship between Structure and Conformational Change of the Vitamin D Receptor Ligand Binding Domain in 1α,25-Dihydroxyvitamin D3 Signaling.

Lin-Yan Wan, Yan-Qiong Zhang, Meng-Di Chen, You-Qin Du, Chang-Bai Liu, Jiang-Feng Wu

Open access · goldAbstract readReview
In one paragraph

Review in Molecules (Basel, Switzerland), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Genetic Causes of Rickets.Journal of clinical research in pediatric endocrinology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lin-Yan WanMedical College, China Three Gorges University, 8 Daxue Road, Xiling District, Yichang 443002, China. wanlinyan0224@163.com.
Yan-Qiong ZhangMedical College, China Three Gorges University, 8 Daxue Road, Xiling District, Yichang 443002, China. zhangyanqiong@ctgu.edu.cn.
Meng-Di ChenMedical College, China Three Gorges University, 8 Daxue Road, Xiling District, Yichang 443002, China. 15572753727@163.com.
You-Qin DuMedical College, China Three Gorges University, 8 Daxue Road, Xiling District, Yichang 443002, China. youqindu@126.com.
Chang-Bai LiuMedical College, China Three Gorges University, 8 Daxue Road, Xiling District, Yichang 443002, China. cbliu@ctgu.edu.cn.
Jiang-Feng WuMedical College, China Three Gorges University, 8 Daxue Road, Xiling District, Yichang 443002, China. wujiangfeng@ctgu.edu.cn.
China Three Gorges University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vitamin D Receptor (VDR) belongs to the nuclear receptor (NR) superfamily. Whereas the structure of the ligand binding domain (LBD) of VDR has been determined in great detail, the role of its amino acid residues in stabilizing the structure and ligand triggering conformational change is still under debate. There are 13 α-helices and one β-sheet in the VDR LBD and they form a three-layer sandwich structure stabilized by 10 residues. Thirty-six amino acid residues line the ligand binding pocket (LBP) and six of these residues have hydrogen-bonds linking with the ligand. In 1α,25-dihydroxyvitamin D₃ signaling, H3 and H12 play an important role in the course of conformational change resulting in the provision of interfaces for dimerization, coactivator (CoA), corepressor (CoR), and hTAFII 28. In this paper we provide a detailed description of the amino acid residues stabilizing the structure and taking part in conformational change of VDR LBD according to functional domains.

Indexed as

Models, MolecularMolecular ConformationProtein Interaction Domains and MotifsSignal TransductionAmino Acid SequenceAnimalsBinding SitesHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsLigandsMolecular Sequence DataProtein BindingReceptors, CalcitriolSequence AlignmentStructure-Activity Relationshipdihydroxy-vitamin D3LigandsReceptors, CalcitriolVitamin Dconformational changefunctional domainsligand binding domainstructure basisvitamin D receptor

Identifiers

PMID26593892
PMCPMC6332228
OpenAlexW2174459382

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.