Evidence map›Paper›PMID 26592194›Full record

ArticleNature communications2015

TRIM33 switches off Ifnb1 gene transcription during the late phase of macrophage activation.

Federica Ferri, Aude Parcelier, Vanessa Petit, Anne-Sophie Gallouet, Daniel Lewandowski, Marion Dalloz, Anita van den Heuvel, Petros Kolovos, Eric Soler, Mario Leonardo Squadrito and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 66 citations in OpenAlex.

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  15. Pathological autoantibody internalisation in myositis.Annals of the rheumatic diseases · 2024
    Article
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  20. Pathogenic autoantibody internalization in myositis.medRxiv : the preprint server for health sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

Federica FerriCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
Aude ParcelierCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
Vanessa PetitCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
Anne-Sophie GallouetCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
Daniel LewandowskiCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
Marion DallozCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
Anita van den HeuvelDepartment of Cell Biology, Erasmus Medical Center, DR Molenwaterplein 50, Rotterdam 3015GE, The Netherlands.
Petros KolovosDepartment of Cell Biology, Erasmus Medical Center, DR Molenwaterplein 50, Rotterdam 3015GE, The Netherlands.
Eric SolerCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
Mario Leonardo SquadritoThe Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences École Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland.
Michele De PalmaThe Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences École Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland.
Irwin DavidsonDepartment of Functional Genomics and Cancer, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/ULP, BP 163, Strasbourg, Illkirch Cedex 67404, France.
Germain RousseletCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
Paul-Henri RomeoCEA/DSV/iRCM/LRTS, 18 route du Panorama, Fontenay-aux-Roses 92265, France.
CEA Paris-Saclay - Etablissement de Fontenay-aux-roses · FRUniversité Paris-Sud · FRÉcole Polytechnique Fédérale de Lausanne · CHErasmus MC · NLDélégation Paris 7 · FRInserm · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite its importance during viral or bacterial infections, transcriptional regulation of the interferon-β gene (Ifnb1) in activated macrophages is only partially understood. Here we report that TRIM33 deficiency results in high, sustained expression of Ifnb1 at late stages of toll-like receptor-mediated activation in macrophages but not in fibroblasts. In macrophages, TRIM33 is recruited by PU.1 to a conserved region, the Ifnb1 Control Element (ICE), located 15 kb upstream of the Ifnb1 transcription start site. ICE constitutively interacts with Ifnb1 through a TRIM33-independent chromatin loop. At late phases of lipopolysaccharide activation of macrophages, TRIM33 is bound to ICE, regulates Ifnb1 enhanceosome loading, controls Ifnb1 chromatin structure and represses Ifnb1 gene transcription by preventing recruitment of CBP/p300. These results characterize a previously unknown mechanism of macrophage-specific regulation of Ifnb1 transcription whereby TRIM33 is critical for Ifnb1 gene transcription shutdown.

Indexed as

Gene Expression RegulationAnimalsFemaleInterferon-betaMacrophage ActivationMacrophagesMaleMiceMice, Inbred C57BLTranscription FactorsTranscription, GeneticInterferon-betaTranscription FactorsTrim33 protein, mouse

Identifiers

PMID26592194
PMCPMC4673826
OpenAlexW2114017212

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.