Evidence map›Paper›PMID 26590343›Full record

ArticleNeuron2015

Correspondence between Resting-State Activity and Brain Gene Expression.

Guang-Zhong Wang, T Grant Belgard, Deng Mao, Leslie Chen, Stefano Berto, Todd M Preuss, Hanzhang Lu, Daniel H Geschwind, Genevieve Konopka

Open access · bronzeAbstract read
In one paragraph

Article in Neuron, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed, 2 pooled it
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 2 syntheses or guidelines pooled it, 137 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Brain circuit-gene expression relationships and neuroplasticity of multisensory cortices in blind children.Proceedings of the National Academy of Sciences of the United States of America · 2017
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Guang-Zhong WangDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX 75390, USA.
T Grant BelgardProgram in Neurobehavioral Genetics, Center for Autism Treatment and Research, Semel Institute, Program in Neurogenetics, Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Deng MaoAdvanced Imaging Research Center, UT Southwestern Medical Center, Dallas, TX 75390, USA.
Leslie ChenDepartment of Human Genetics, Center for Autism Treatment and Research, Semel Institute, Program in Neurogenetics, Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Stefano BertoDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX 75390, USA.
Todd M PreussDivision of Neuropharmacology and Neurologic Diseases, Yerkes National Primate Research Center, Emory University, and Department of Pathology, Emory University School of Medicine, Atlanta, GA 30329, USA.
Hanzhang LuAdvanced Imaging Research Center, UT Southwestern Medical Center, Dallas, TX 75390, USA; Departments of Psychiatry and Radiology, UT Southwestern Medical Center, Dallas, TX 75390, USA.
Daniel H GeschwindDepartment of Human Genetics, Center for Autism Treatment and Research, Semel Institute, Program in Neurogenetics, Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA. Electronic address: dhg@ucla.edu.
Genevieve KonopkaDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX 75390, USA. Electronic address: genevieve.konopka@utsouthwestern.edu.
Southwestern Medical Center · USUniversity of California, Los Angeles · USAdvanced Imaging Research (United States) · USEmory University · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
Autism Genetics, Phase II: Increasing Representation of Human DiversityR01MH100027 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2013 to 2024
$31.7M
Training Grant in Neurobehavioral GeneticsT32NS048004 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BEARDEN, CARRIE E, OPHOFF, ROEL A · 2004 to 2025
$5.8M
Identification and Characterization of Asymmetrically-Expressed GenesR37MH060233 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2006 to 2014
$5.3M
Human Specific Brain DNA Methylation and Neuropsychiatric DiseasesR01MH103517 · NIMH · GEORGIA INSTITUTE OF TECHNOLOGY · PI JORDAN, IRVING KING, PREUSS, TODD M · 2015 to 2019
$3.5M
Epigenetic and Transcriptional Dysregulation in Autism Spectrum DisorderR01MH094714 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2011 to 2015
$2.8M
The role of Foxp1-regulated signaling pathways in brain development and behaviorR01MH102603 · NIMH · UT SOUTHWESTERN MEDICAL CENTER · PI KONOPKA, GENEVIEVE · 2015 to 2019
$2.2M
FOXP2-Regulated Signaling Pathways Critical for Higher Cognitive FunctionsR00MH090238 · NIMH · UT SOUTHWESTERN MEDICAL CENTER · PI KONOPKA, GENEVIEVE · 2011 to 2013
$856k
Identification of human-relevant CLOCK molecular signaling pathwaysR21MH107672 · NIMH · UT SOUTHWESTERN MEDICAL CENTER · PI KONOPKA, GENEVIEVE · 2015 to 2016
$445k
NCRR NIH HHS P51RR165NICHD NIH HHS N01-HD-4-3368NICHD NIH HHS N01-HD-4-3383NIH HHS P51 OD011132NIH HHS P51OD11132NIMH NIH HHS R00 MH090238NIMH NIH HHS R00MH090238NIMH NIH HHS R01 MH094714NIMH NIH HHS R01MH094714NIMH NIH HHS R01 MH100027NIMH NIH HHS R01MH100027NIMH NIH HHS R01 MH102603NIMH NIH HHS R01MH102603NIMH NIH HHS R01 MH103517NIMH NIH HHS R01MH103517NIMH NIH HHS R21 MH107672NIMH NIH HHS R21MH107672NIMH NIH HHS R37 MH060233NIMH NIH HHS R37MH060233NINDS NIH HHS T32 NS048004NINDS NIH HHS T32NS048004
6 · The paper itself

Abstract

The relationship between functional brain activity and gene expression has not been fully explored in the human brain. Here, we identify significant correlations between gene expression in the brain and functional activity by comparing fractional amplitude of low-frequency fluctuations (fALFF) from two independent human fMRI resting-state datasets to regional cortical gene expression from a newly generated RNA-seq dataset and two additional gene expression datasets to obtain robust and reproducible correlations. We find significantly more genes correlated with fALFF than expected by chance and identify specific genes correlated with the imaging signals in multiple expression datasets in the default mode network. Together, these data support a population-level relationship between regional steady-state brain gene expression and resting-state brain activity.

Indexed as

AdultBrainFemaleFunctional NeuroimagingGene ExpressionHumansMagnetic Resonance ImagingMaleMiddle AgedNeocortexNeural PathwaysRNA, MessengerSequence Analysis, RNARNA, Messenger

Identifiers

PMID26590343
PMCPMC4694561
OpenAlexW2951722595

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.