Evidence map›Paper›PMID 26590310›Full record

ArticleJournal of experimental botany2016

Two key polymorphisms in a newly discovered allele of the Vitis vinifera TPS24 gene are responsible for the production of the rotundone precursor α-guaiene.

Damian Paul Drew, Trine Bundgaard Andersen, Crystal Sweetman, Birger Lindberg Møller, Christopher Ford, Henrik Toft Simonsen

Abstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Plant terpene specialized metabolism: complex networks or simple linear pathways?The Plant journal : for cell and molecular biology · 2023
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Germacrene A-A Central Intermediate in Sesquiterpene Biosynthesis.Chemistry (Weinheim an der Bergstrasse, Germany) · 2020
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. The genetic basis of grape and wine aroma.Horticulture research · 2019
    Review
  18. P450s controlling metabolic bifurcations in plant terpene specialized metabolism.Phytochemistry reviews : proceedings of the Phytochemical Society of Europe · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Damian Paul DrewPlant Biochemistry Laboratory, Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, DK-1871 Frederiksberg C, Denmark Wine Science, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae SA 5064, Australia.
Trine Bundgaard AndersenPlant Biochemistry Laboratory, Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, DK-1871 Frederiksberg C, Denmark.
Crystal SweetmanWine Science, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae SA 5064, Australia.
Birger Lindberg MøllerPlant Biochemistry Laboratory, Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, DK-1871 Frederiksberg C, Denmark.
Christopher FordWine Science, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae SA 5064, Australia.
Henrik Toft SimonsenPlant Biochemistry Laboratory, Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, DK-1871 Frederiksberg C, Denmark hts@plen.ku.dk.ORCID http://orcid.org/0000-0003-3070-807X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rotundone was initially identified as a grape-derived compound responsible for the peppery aroma of Shiraz wine varieties. It has subsequently been found in black and white pepper and several other spices. Because of its potent aroma, the molecular basis for rotundone formation is of particular relevance to grape and wine scientists and industry. We have identified and functionally characterized in planta a sesquiterpene synthase, VvGuaS, from developing grape berries, and have demonstrated that it produces the precursor of rotundone, α-guaiene, as its main product. The VvGuaS enzyme is a novel allele of the sesquiterpene synthase gene, VvTPS24, which has previously been reported to encode VvPNSeInt, an enzyme that produces a variety of selinene-type sesquiterpenes. This newly discovered VvTPS24 allele encodes an enzyme 99.5% identical to VvPNSeInt, with the differences comprising just 6 out of the 561 amino acid residues. Molecular modelling of the enzymes revealed that two of these residues, T414 and V530, are located in the active site of VvGuaS within 4 Å of the binding-site of the substrate, farnesyl pyrophosphate. Mutation of these two residues of VvGuaS into the corresponding polymorphisms in VvPNSeInt results in a complete functional conversion of one enzyme into the other, while mutation of each residue individually produces an intermediate change in the product profile. We have therefore demonstrated that VvGuaS, an enzyme responsible for production of the rotundone precursor, α-guaiene, is encoded by a novel allele of the previously characterized grapevine gene VvTPS24 and that two specific polymorphisms are responsible for functional differences between VvTPS24 alleles.

Indexed as

AllelesGenes, PlantPolymorphism, GeneticAzulenesGas Chromatography-Mass SpectrometryModels, MolecularMutagenesis, Site-DirectedPlant ProteinsSesquiterpenesSesquiterpenes, GuaianeStructural Homology, ProteinVitisVolatile Organic CompoundsAzulenesguaienePlant ProteinsrotundoneSesquiterpenesSesquiterpenes, GuaianeVolatile Organic CompoundsPinot Noirrotundonesesquiterpene synthasesesquiterpenoidsShirazwine aroma.

Identifiers

PMID26590310
PMCPMC4737073

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.