Evidence map›Paper›PMID 26590281›Full record

ArticleApplied and environmental microbiology2016

Expanding the Limits of Thermoacidophily in the Archaeon Sulfolobus solfataricus by Adaptive Evolution.

Samuel McCarthy, Tyler Johnson, Benjamin J Pavlik, Sophie Payne, Wendy Schackwitz, Joel Martin, Anna Lipzen, Erica Keffeler, Paul Blum

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. Membrane lipid and expression responses ofFrontiers in microbiology · 2023
    Article
  4. Physiological Characterization ofInternational journal of environmental research and public health · 2021
    Article
  5. The Cell Membrane ofInternational journal of molecular sciences · 2020
    Review
  6. Acid Experimental Evolution of the HaloarchaeonFrontiers in microbiology · 2020
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Calditol-linked membrane lipids are required for acid tolerance inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Nonmutational mechanism of inheritance in the ArchaeonProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Biotechnology of extremely thermophilic archaea.FEMS microbiology reviews · 2018
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Samuel McCarthySchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Tyler JohnsonSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Benjamin J PavlikDepartment of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Sophie PayneSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Wendy SchackwitzU.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
Joel MartinU.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
Anna LipzenU.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
Erica KeffelerSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Paul BlumSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA Department of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln, Lincoln, Nebraska, USA pblum1@unl.edu.
University of Nebraska–Lincoln · USJoint Genome Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extremely thermoacidophilic Crenarchaeota belonging to the order Sulfolobales flourish in hot acidic habitats that are strongly oxidizing. The pH extremes of these habitats, however, often exceed the acid tolerance of type species and strains. Here, adaptive laboratory evolution was used over a 3-year period to test whether such organisms harbor additional thermoacidophilic capacity. Three distinct cell lines derived from a single type species were subjected to high-temperature serial passage while culture acidity was gradually increased. A 178-fold increase in thermoacidophily was achieved after 29 increments of shifted culture pH resulting in growth at pH 0.8 and 80°C. These strains were named super-acid-resistant Crenarchaeota (SARC). Mathematical modeling using growth parameters predicted the limits of acid resistance, while genome resequencing and transcriptome resequencing were conducted for insight into mechanisms responsible for the evolved trait. Among the mutations that were detected, a set of eight nonsynonymous changes may explain the heritability of increased acid resistance despite an unexpected lack of transposition. Four multigene components of the SARC transcriptome implicated oxidative stress as a primary challenge accompanying growth at acid extremes. These components included accelerated membrane biogenesis, induction of the mer operon, and an increased capacity for the generation of energy and reductant.

Indexed as

Directed Molecular EvolutionHot TemperatureAdaptation, PhysiologicalArchaeal ProteinsBiotechnologyGenome, BacterialHydrogen-Ion ConcentrationModels, BiologicalMultigene FamilyMutationOperonOxidation-ReductionOxidative StressSequence Analysis, DNASulfolobus solfataricusTime FactorsArchaeal Proteins

Identifiers

PMID26590281
PMCPMC4725277
OpenAlexW2264381747

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.