Evidence map›Paper›PMID 26589801›Full record

ArticleThe Journal of biological chemistry2016

Arabidopsis Rab Geranylgeranyltransferases Demonstrate Redundancy and Broad Substrate Specificity in Vitro.

Wan Shi, Qin Zeng, Barbara N Kunkel, Mark P Running

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Wan ShiFrom the Department of Biology, Washington University, Saint Louis, Missouri 63130.
Qin Zengthe Donald Danforth Plant Science Center, Saint Louis, Missouri 63132, and.
Barbara N KunkelFrom the Department of Biology, Washington University, Saint Louis, Missouri 63130.
Mark P Runningthe Department of Biology, University of Louisville, Louisville, Kentucky 40292 mark.running@louisville.edu.
Washington University in St. Louis · USDonald Danforth Plant Science Center · USUniversity of Louisville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Posttranslational lipid modifications mediate the membrane attachment of Rab GTPases, facilitating their function in regulating intracellular vesicular trafficking. In Arabidopsis, most Rab GTPases have two C-terminal cysteines and potentially can be double-geranylgeranylated by heterodimeric Rab geranylgeranyltransferases (Rab-GGTs). Genes encoding two putative α subunits and two putative β subunits of Rab-GGTs have been annotated in the Arabidopsis thaliana genome, but little is known about Rab-GGT activity in Arabidopsis. In this study, we demonstrate that four different heterodimers can be formed between putative Arabidopsis Rab-GGT α subunits RGTA1/RGTA2 and β subunits RGTB1/RGTB2, but only RGTA1·RGTB1 and RGTA1·RGTB2 exhibit bona fide Rab-GGT activity, and they are biochemically redundant in vitro. We hypothesize that RGTA2 function might be disrupted by a 12-amino acid insertion in a conserved motif. We present evidence that Arabidopsis Rab-GGTs may have preference for prenylation of C-terminal cysteines in particular positions. We also demonstrate that Arabidopsis Rab-GGTs can not only prenylate a great variety of Rab GTPases in the presence of Rab escort protein but, unlike Rab-GGT in yeast and mammals, can also prenylate certain non-Rab GTPases independently of Rab escort protein. Our findings may help to explain some of the phenotypes of Arabidopsis protein prenyltransferase mutants.

Indexed as

Adaptor Proteins, Signal TransducingAlkyl and Aryl TransferasesAmino Acid SequenceAmino Acid SubstitutionArabidopsisArabidopsis ProteinsConsensus SequenceCysteineIsoenzymesMolecular Sequence DataMutagenesis, InsertionalPoint MutationProtein PrenylationProtein Subunitsrab GTP-Binding ProteinsRecombinant Fusion ProteinsAdaptor Proteins, Signal TransducingAlkyl and Aryl TransferasesArabidopsis ProteinsCysteineIsoenzymesProtein SubunitsRab escort protein, ArabidopsisRab geranylgeranyltransferaserab GTP-Binding ProteinsRecombinant Fusion ProteinsRecombinant ProteinsArabidopsis thalianagene duplicationgeranylgeranyl diphosphatepost-translational modification (PTM)protein isoprenylationRabRab geranylgeranyltransferasesmall GTPase

Identifiers

PMID26589801
PMCPMC4714223
OpenAlexW2235592447

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.