Evidence map›Paper›PMID 26589421›Full record

ArticleMolecular genetics and genomics : MGG2016

Regulation signature of miR-143 and miR-26 in porcine Salmonella infection identified by binding site enrichment analysis.

Min Yao, Weihua Gao, Hengxun Tao, Jun Yang, Guoping Liu, Tinghua Huang

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Modulation of Host miRNAs by Intracellular Bacterial Pathogens.Frontiers in cellular and infection microbiology · 2016
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Min YaoCollege of Animal Science, Yangtze University, Jingzhou, 434025, Hubei, China.
Weihua GaoCollege of Animal Science, Yangtze University, Jingzhou, 434025, Hubei, China.
Hengxun TaoCollege of Animal Science, Yangtze University, Jingzhou, 434025, Hubei, China.
Jun YangCollege of Animal Science, Yangtze University, Jingzhou, 434025, Hubei, China.
Guoping LiuCollege of Animal Science, Yangtze University, Jingzhou, 434025, Hubei, China.
Tinghua HuangCollege of Animal Science, Yangtze University, Jingzhou, 434025, Hubei, China. thua45@126.com.
Yangtze University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salmonella infects many vertebrate species, and pigs colonized with Salmonella are typically Salmonella carriers. Transcriptomic analysis of the response to Salmonella infection in whole blood has been reported for the pig. The objective of this study is to identify the important miRNAs involved in Salmonella infection using binding site enrichment analysis. We predicted porcine microRNA (miRNA) binding sites in the 3' UTR of protein-coding genes for all miRNA families. Based on those predictions, we analyzed miRNA-binding sites for mRNAs expressed in peripheral blood to investigate the functional importance of miRNAs in Salmonella infection in pig. Enrichment analysis revealed that binding sites of five miRNAs (including miR-143, -9839, -26, -2483, and -4335) were significantly over represented for the differentially expressed gene sets. Real-time PCR results indicated that selected members of this miRNA group (miR-143, -26, and -4335) were differentially expressed in whole blood after Salmonella inoculation. The luciferase reporter assay showed that ATP6V1A and IL13RA1 were targets of miR-143 and that miR-26 regulates BINP3L and ARL6IP6. The results strongly suggest that miR-143 and miR-26 play important regulatory roles in the development of Salmonella infection in pig.

Indexed as

Gene Expression ProfilingAnimalsBinding SitesGene Expression Regulation, BacterialHost-Pathogen InteractionsMicroRNAsRNA, MessengerSalmonellaSalmonella Infections, AnimalSwineMicroRNAsRNA, MessengermicroRNAmiR-143miR-26PigSalmonella

Identifiers

PMID26589421
OpenAlexW2176558564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.