Evidence map›Paper›PMID 26589211›Full record

ArticleGenetica2016

Phylogenetic analysis of PR genes in some pome fruit species with the emphasis on transcriptional analysis and ROS response under Erwinia amylovora inoculation in apple.

Maryam Hassani, Seyed Alireza Salami, Jaber Nasiri, Hamid Abdollahi, Zahra Ghahremani

Abstract read
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In one paragraph

Article in Genetica, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Enhancement of oxidative stress contributes to increased pathogenicity of the invasive pine wood nematode.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Maryam HassaniDepartment of Biotechnology, Faculty of Agriculture and Natural Resources, Azad University (Science and Research Branch), P.O. Box 4933, Tehran, 14155, Iran. hasani.maryam64@gmail.com.
Seyed Alireza SalamiDepartment of Horticultural Sciences, Faculty of Agriculture and Natural Resources, University of Tehran, P.O. Box 4111, Karaj, 31587, Iran. asalami@ut.ac.ir.
Jaber NasiriDepartment of Agronomy and Plant Breeding, Division of Molecular Plant Genetics, College of Agricultural & Natural Resources, University of Tehran, Karaj, Tehran, Iran. jaber.nasiri@ut.ac.ir.
Hamid AbdollahiDepartment of Horticulture Research, Seed and Plant Improvement Institute, P.O. Box 4119, Karaj, 31585, Iran. Hamidabdollahi@spii.ir.
Zahra GhahremaniDepartment of Biotechnology, Faculty of Agriculture and Natural Resources, Azad University (Science and Research Branch), P.O. Box 4933, Tehran, 14155, Iran. zghahremani1979@yahoo.com.
Islamic Azad University, Science and Research Branch · IRUniversity of Tehran · IRAgricultural Research & Education Organization · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Attempts were made to identify eight pathogenesis related (PR) genes (i.e., PR-1a, PR3-ch1, PR3-Ch2, PR3-Ch3, PR3-Ch4, PR3-Ch5, PR-5 and PR-8) from 27 genotypes of apple, quince and pear, which are induced in response to inoculation with the pathogen Erwinia amylovora, the causal agent of fire blight. Totally, 32 PR genes of different families were obtained, excepting PR3-Ch2 (amplified only in apple) and PR3-Ch4 (amplified only in apple and pear), the others were successfully amplified in all the genotypes of apple, quince and pear. Evolutionary, the genes of each family exhibited significant homology with each other, as the corresponded phylogenetic neighbor-joining-based dendrograms were taken into consideration. Meanwhile, according to the expression assay, it was deduced that the pathogen activity can significantly affect the expression levels of some selected PR genes of PR3-Ch2, PR3-Ch4, PR3-Ch5 and particularly Cat I in both resistant (MM-111) and semi-susceptible (MM-106) apple rootstocks. Lastly, it was concluded that the pathogen E. amylovora is able to stimulate ROS response, particularly using generation of hydrogen peroxide (H2O2) in both aforementioned apple rootstock.

Indexed as

Erwinia amylovoraPhylogenyDisease ResistanceDNA, PlantFruitGenes, PlantMalusPlant DiseasesPlant ProteinsPyrusReactive Oxygen SpeciesRosaceaeSequence Analysis, DNADNA, Plantpathogenesis-related proteins, plantPlant ProteinsReactive Oxygen SpeciesErwinia amylovoraFire blightPome fruit speciesPR genesROS response

Identifiers

PMID26589211
OpenAlexW2262157206

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.