Evidence map›Paper›PMID 26588566›Full record

ArticleBiophysical journal2015

The Molecular Mechanism Underlying Recruitment and Insertion of Lipid-Anchored LC3 Protein into Membranes.

Lipi Thukral, Durba Sengupta, Amrita Ramkumar, Divya Murthy, Nikhil Agrawal, Rajesh S Gokhale

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Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Lipi ThukralCSIR-Institute of Genomics and Integrative Biology (IGIB), New Delhi, India. Electronic address: lipi.thukral@igib.in.
Durba SenguptaCSIR-National Chemical Laboratory (NCL), Pune, India.
Amrita RamkumarCSIR-Institute of Genomics and Integrative Biology (IGIB), New Delhi, India.
Divya MurthyCSIR-Institute of Genomics and Integrative Biology (IGIB), New Delhi, India.
Nikhil AgrawalCSIR-Institute of Genomics and Integrative Biology (IGIB), New Delhi, India.
Rajesh S GokhaleCSIR-Institute of Genomics and Integrative Biology (IGIB), New Delhi, India. Electronic address: rsg@igib.in.
Institute of Genomics and Integrative Biology · INNational Chemical Laboratory · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lipid modification of cytoplasmic proteins initiates membrane engagement that triggers diverse cellular processes. Despite the abundance of lipidated proteins in the human proteome, the key determinants underlying membrane recognition and insertion are poorly understood. Here, we define the course of spontaneous membrane insertion of LC3 protein modified with phosphatidylethanolamine using multiple coarse-grain simulations. The partitioning of the lipid anchor chains proceeds through a concerted process, with its two acyl chains inserting one after the other. Concurrently, a conformational rearrangement involving the α-helix III of LC3, especially in the three basic residues Lys65, Arg68, and Arg69, ensures stable insertion of the phosphatidylethanolamine anchor into membranes. Mutational studies validate the crucial role of these residues, and further live-cell imaging analysis shows a substantial reduction in the formation of autophagic vesicles for the mutant proteins. Our study captures the process of water-favored LC3 protein recruitment to the membrane and thus opens, to our knowledge, new avenues to explore the cellular dynamics underlying vesicular trafficking.

Indexed as

Amino Acid SequenceAnimalsCell MembraneHEK293 CellsHeLa CellsHumansLipid BilayersMicrotubule-Associated ProteinsMolecular Dynamics SimulationMolecular Sequence DataPhosphatidylethanolaminesRatsAnxa3 protein, ratLipid BilayersMicrotubule-Associated ProteinsphosphatidylethanolaminePhosphatidylethanolamines

Identifiers

PMID26588566
PMCPMC4656858
OpenAlexW2172559773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.