Evidence map›Paper›PMID 26588462›Full record

ArticlePLoS genetics2015

A Cytosine Methyltransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen [corrected].

Michael C Chao, Shijia Zhu, Satoshi Kimura, Brigid M Davis, Eric E Schadt, Gang Fang, Matthew K Waldor

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Integration of themBio · 2022
    Article
  11. Article
  12. DNA Methylation in Prokaryotes.Advances in experimental medicine and biology · 2022
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. The bacterial epigenome.Nature reviews. Microbiology · 2020
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Michael C ChaoDivision of Infectious Disease, Brigham and Women's Hospital, Boston, Massachusetts, United States of America.
Shijia ZhuDepartment of Genetics and Genomic Sciences, Institute for Genomics and Multi-scale Biology, Mount Sinai School of Medicine, New York, New York, United States of America.
Satoshi KimuraDivision of Infectious Disease, Brigham and Women's Hospital, Boston, Massachusetts, United States of America.
Brigid M DavisDivision of Infectious Disease, Brigham and Women's Hospital, Boston, Massachusetts, United States of America.
Eric E SchadtHoward Hughes Medical Institute, Boston, Massachusetts, United States of America.
Gang FangDepartment of Genetics and Genomic Sciences, Institute for Genomics and Multi-scale Biology, Mount Sinai School of Medicine, New York, New York, United States of America.
Matthew K WaldorDivision of Infectious Disease, Brigham and Women's Hospital, Boston, Massachusetts, United States of America.
Howard Hughes Medical Institute · USIcahn School of Medicine at Mount Sinai · USHarvard University · US

Funding

Molecular Biology and Virulence of CTX PhageR37AI042347 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI WALDOR, MATTHEW K · 2008 to 2017
$3.8M
Methods for Multiscale and Integrative Characterization of Bacterial EpigenomesR01GM114472 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FANG, GANG · 2015 to 2019
$2.1M
Decoding methylation mediated epigenetic control using single molecule sequencingF32GM108355 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI CHAO, MICHAEL · 2013 to 2014
$107k
NIAID NIH HHS AI R37-042347NIAID NIH HHS R37 AI042347NIGMS NIH HHS 5F32 GM108355-02NIGMS NIH HHS F32 GM108355NIGMS NIH HHS R01 GM114472
6 · The paper itself

Abstract

DNA methylation is a key epigenetic regulator in all domains of life, yet the effects of most bacterial DNA methyltransferases on cellular processes are largely undefined. Here, we used diverse techniques, including bisulfite sequencing, transcriptomics, and transposon insertion site sequencing to extensively characterize a 5-methylcytosine (5mC) methyltransferase, VchM, in the cholera pathogen, Vibrio cholerae. We have comprehensively defined VchM's DNA targets, its genetic interactions and the gene networks that it regulates. Although VchM is a relatively new component of the V. cholerae genome, it is required for optimal V. cholerae growth in vitro and during infection. Unexpectedly, the usually essential σE cell envelope stress pathway is dispensable in ∆vchM V. cholerae, likely due to its lower activation in this mutant and the capacity for VchM methylation to limit expression of some cell envelope modifying genes. Our work illuminates how an acquired DNA methyltransferase can become integrated within complex cell circuits to control critical housekeeping processes.

Indexed as

DNA, BacterialDNA (Cytosine-5-)-MethyltransferasesDNA MethylationGene Regulatory NetworksStress, PhysiologicalVibrio choleraeDNA, BacterialDNA (Cytosine-5-)-Methyltransferases

Identifiers

PMID26588462
PMCPMC4654547
OpenAlexW2178098051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.