Evidence map›Paper›PMID 26588229›Full record

ArticlePLoS neglected tropical diseases2015

Shaking the Tree: Multi-locus Sequence Typing Usurps Current Onchocercid (Filarial Nematode) Phylogeny.

Emilie Lefoulon, Odile Bain, Jérôme Bourret, Kerstin Junker, Ricardo Guerrero, Israel Cañizales, Yuriy Kuzmin, Tri Baskoro T Satoto, Jorge Manuel Cardenas-Callirgos, Sueli de Souza Lima and 4 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed.

  1. Article
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  6. Review
  7. Molecular and Phylogenetic Characterization ofPathogens (Basel, Switzerland) · 2026
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  9. Molecular Characterization ofJournal of parasitology research · 2026
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  10. Uncovering a neglected canine filarioid in Asia: First evidence ofCurrent research in parasitology & vector-borne diseases · 2026
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  11. Article
  12. Co-infection ofInternational journal for parasitology. Parasites and wildlife · 2025
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  13. Article
  14. Article
  15. Article
  16. Article
  17. A vascular filarial nematode in sika deer (International journal for parasitology. Parasites and wildlife · 2025
    Article
  18. Article
  19. Article
  20. Review

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Emilie LefoulonUnité Molécules de Communication et Adaptation des Microorganismes, Sorbonne Universités, Muséum national d'Histoire naturelle, Paris, France.
Odile BainUnité Molécules de Communication et Adaptation des Microorganismes, Sorbonne Universités, Muséum national d'Histoire naturelle, Paris, France.
Jérôme BourretUnité Molécules de Communication et Adaptation des Microorganismes, Sorbonne Universités, Muséum national d'Histoire naturelle, Paris, France.
Kerstin JunkerARC-Onderstepoort Veterinary Institute, Onderstepoort, South Africa.
Ricardo GuerreroLaboratorio de Biologia de Vectores y Parásitos, Instituto de Zoologia y Ecologia Tropical, Facultad de Ciencias, Universidad Central de Venezuela, Caracas, Venezuela.
Israel CañizalesLaboratorio de Biologia de Vectores y Parásitos, Instituto de Zoologia y Ecologia Tropical, Facultad de Ciencias, Universidad Central de Venezuela, Caracas, Venezuela.
Yuriy KuzminInstitute of Zoology, Ukrainian National Academy of Sciences, Kiev, Ukraine.
Tri Baskoro T SatotoCenter For Tropical Medicine, Universitas Gadjah Mada, Jl Teknika Utara Yogyakarta, Indonesia.
Jorge Manuel Cardenas-CallirgosAsociación Peruana de Helmintologia e Invertebrados Afines (APHIA), Peru.
Sueli de Souza LimaLTEH ODILE BAIN, Departamento de Zoologia, Instituto de Ciências Biológicas Universidade Federal de Juiz de Fora, Minas Gerais, Brasil.
Christian RaccurtLaboratoire National de Santé Publique, Port-au-Prince, Haiti.
Yasen MutafchievInstitute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, Sofia, Bulgaria.
Laurent GavotteUniversité Montpellier, place Eugène Bataillon, Montpellier, France.
Coralie MartinUnité Molécules de Communication et Adaptation des Microorganismes, Sorbonne Universités, Muséum national d'Histoire naturelle, Paris, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the past twenty years, a number of molecular analyses have been performed to determine the evolutionary relationships of Onchocercidae, a family of filarial nematodes encompassing several species of medical or veterinary importance. However, opportunities for broad taxonomic sampling have been scarce, and analyses were based mainly on 12S rDNA and coxI gene sequences. While being suitable for species differentiation, these mitochondrial genes cannot be used to infer phylogenetic hypotheses at higher taxonomic levels. In the present study, 48 species, representing seven of eight subfamilies within the Onchocercidae, were sampled and sequences of seven gene loci (nuclear and mitochondrial) analysed, resulting in the hitherto largest molecular phylogenetic investigation into this family. Although our data support the current hypothesis that the Oswaldofilariinae, Waltonellinae and Icosiellinae subfamilies separated early from the remaining onchocercids, Setariinae was recovered as a well separated clade. Dirofilaria, Loxodontofilaria and Onchocerca constituted a strongly supported clade despite belonging to different subfamilies (Onchocercinae and Dirofilariinae). Finally, the separation between Splendidofilariinae, Dirofilariinae and Onchocercinae will have to be reconsidered.

Indexed as

GenotypePhylogenyAnimalsDNA, HelminthFilarioideaMolecular Sequence DataMultilocus Sequence TypingSequence Analysis, DNADNA, Helminth

Identifiers

PMID26588229
PMCPMC4654488

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.