Evidence map›Paper›PMID 26587715›Full record

ArticleNature chemistry2015

Reconstitution of [Fe]-hydrogenase using model complexes.

Seigo Shima, Dafa Chen, Tao Xu, Matthew D Wodrich, Takashi Fujishiro, Katherine M Schultz, Jörg Kahnt, Kenichi Ataka, Xile Hu

Open access · greenAbstract read
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In one paragraph

Article in Nature chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Diversifying Metal-Ligand Cooperative Catalysis in Semi-Synthetic [Mn]-Hydrogenases.Angewandte Chemie (International ed. in English) · 2021
    Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Seigo ShimaMax Planck Institute for Terrestrial Microbiology, Marburg 35043, Germany.
Dafa ChenSchool of Chemical Engineering and Technology, Harbin Institute of Technology, Harbin 150001, China.
Tao XuLaboratory of Inorganic Synthesis and Catalysis, Institute of Chemical Science and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.
Matthew D WodrichLaboratory of Inorganic Synthesis and Catalysis, Institute of Chemical Science and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.
Takashi FujishiroMax Planck Institute for Terrestrial Microbiology, Marburg 35043, Germany.ORCID http://orcid.org/0000-0001-7967-8380
Katherine M SchultzLaboratory of Inorganic Synthesis and Catalysis, Institute of Chemical Science and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.
Jörg KahntMax Planck Institute for Terrestrial Microbiology, Marburg 35043, Germany.
Kenichi AtakaDepartment of Physics, Freie Universität Berlin, Berlin 14195, Germany.
Xile HuLaboratory of Inorganic Synthesis and Catalysis, Institute of Chemical Science and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.
École Polytechnique Fédérale de Lausanne · CHMax Planck Institute for Terrestrial Microbiology · DEFreie Universität Berlin · DEHarbin Institute of Technology · CNJapan Science and Technology Agency · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

[Fe]-Hydrogenase catalyses the reversible hydrogenation of a methenyltetrahydromethanopterin substrate, which is an intermediate step during the methanogenesis from CO2 and H2. The active site contains an iron-guanylylpyridinol cofactor, in which Fe(2+) is coordinated by two CO ligands, as well as an acyl carbon atom and a pyridinyl nitrogen atom from a 3,4,5,6-substituted 2-pyridinol ligand. However, the mechanism of H2 activation by [Fe]-hydrogenase is unclear. Here we report the reconstitution of [Fe]-hydrogenase from an apoenzyme using two FeGP cofactor mimics to create semisynthetic enzymes. The small-molecule mimics reproduce the ligand environment of the active site, but are inactive towards H2 binding and activation on their own. We show that reconstituting the enzyme using a mimic that contains a 2-hydroxypyridine group restores activity, whereas an analogous enzyme with a 2-methoxypyridine complex was essentially inactive. These findings, together with density functional theory computations, support a mechanism in which the 2-hydroxy group is deprotonated before it serves as an internal base for heterolytic H2 cleavage.

Indexed as

Catalytic DomainCoenzymesHydrogenHydrogenaseHydrogenationIron-Sulfur ProteinsModels, MolecularMolecular StructurePterinsPyridinesThermodynamicsCoenzymesHydrogenHydrogenaseiron hydrogenaseIron-Sulfur ProteinsmethenyltetrahydromethanopterinPterinsPyridines

Identifiers

PMID26587715
OpenAlexW2176845456

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.