ArticlePloS one2015
Transcriptome Analysis of Syringa oblata Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 38 citations in OpenAlex.
- Integrative analysis of the metabolome and transcriptome reveals the mechanism of flower color and antioxidant capacity in threeFrontiers in plant science · 2026Article
- Lilac (Syringa oblata) genome provides insights into its evolution and molecular mechanism of petal color change.Communications biology · 2022Article
- Floral Scents and Fruit Aromas: Functions, Compositions, Biosynthesis, and Regulation.Frontiers in plant science · 2022Review
- Article
- Transcriptome sequencing reveals terpene biosynthesis pathway genes accounting for volatile terpene of tree peony.Planta · 2021Article
- Identification of suitable reference genes for studies of Syringa pinnatifolia Hemsl.FEBS open bio · 2021Article
- Integration of Transcriptome and Methylome Analyses Provides Insight Into the Pathway of Floral Scent Biosynthesis inFrontiers in genetics · 2021Article
- Analysis of Relative Scent Intensity, Volatile Compounds and Gene Expression inPlants (Basel, Switzerland) · 2020Article
- Comparative transcriptome analysis to identify candidate genes involved in 2-methoxy-1,4-naphthoquinone (MNQ) biosynthesis in Impatiens balsamina L.Scientific reports · 2020Article
- Development of EST-SSR markers and association mapping with floral traits in Syringa oblata.BMC plant biology · 2020Article
- Volatile Organic Compounds from Orchids: From Synthesis and Function to Gene Regulation.International journal of molecular sciences · 2020Review
- Article
- Transcriptomic analysis reveals flavonoid biosynthesis of Syringa oblata Lindl. in response to different light intensity.BMC plant biology · 2019Article
- RNA sequencing analysis of Cymbidium goeringii identifies floral scent biosynthesis related genes.BMC plant biology · 2019Article
- CYP79D73 Participates in Biosynthesis of Floral Scent Compound 2-Phenylethanol inPlant physiology · 2019Article
- De novo transcriptomic analysis of leaf and fruit tissue of Cornus officinalis using Illumina platform.PloS one · 2018Article
- Transcriptomic Analysis Reveals Mechanisms of Sterile and Fertile Flower Differentiation and Development inFrontiers in plant science · 2017Article
- Transcriptome Sequencing Analysis Reveals a Difference in Monoterpene Biosynthesis between ScentedFrontiers in plant science · 2017Article
- De novo transcriptomic analysis and development of EST-SSRs for Sorbus pohuashanensis (Hance) Hedl.PloS one · 2017Article
- Comparative Transcriptome Reveals Benzenoid Biosynthesis Regulation as Inducer of Floral Scent in the Woody PlantFrontiers in plant science · 2017Article
Corrections and comments
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Syringa oblata Lindl. is a woody ornamental plant with high economic value and characteristics that include early flowering, multiple flower colors, and strong fragrance. Despite a long history of cultivation, the genetics and molecular biology of S. oblata are poorly understood. Transcriptome and expression profiling data are needed to identify genes and to better understand the biological mechanisms of floral pigments and scents in this species. Nine cDNA libraries were obtained from three replicates of three developmental stages: inflorescence with enlarged flower buds not protruded, inflorescence with corolla lobes not displayed, and inflorescence with flowers fully opened and emitting strong fragrance. Using the Illumina RNA-Seq technique, 319,425,972 clean reads were obtained and were assembled into 104,691 final unigenes (average length of 853 bp), 41.75% of which were annotated in the NCBI non-redundant protein database. Among the annotated unigenes, 36,967 were assigned to gene ontology categories and 19,956 were assigned to eukaryoticorthologous groups. Using the Kyoto Encyclopedia of Genes and Genomes pathway database, 12,388 unigenes were sorted into 286 pathways. Based on these transcriptomic data, we obtained a large number of candidate genes that were differentially expressed at different flower stages and that were related to floral pigment biosynthesis and fragrance metabolism. This comprehensive transcriptomic analysis provides fundamental information on the genes and pathways involved in flower secondary metabolism and development in S. oblata, providing a useful database for further research on S. oblata and other plants of genus Syringa.
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