Evidence map›Paper›PMID 26587353›Full record

ArticlePeerJ2015

Metabolic and genomic analysis elucidates strain-level variation in Microbacterium spp. isolated from chromate contaminated sediment.

Michael W Henson, Jorge W Santo Domingo, Peter S Kourtev, Roderick V Jensen, James A Dunn, Deric R Learman

Abstract read
In one paragraph

Article in PeerJ, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Successive use of microorganisms to remove chromium from wastewater.Applied microbiology and biotechnology · 2020
    Review
  8. Article
  9. Comparative Genomics ofFrontiers in microbiology · 2020
    Article
  10. New Plant Growth-Promoting, Chromium-DetoxifyingFrontiers in bioengineering and biotechnology · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Draft Genome Sequences of TwoMicrobiology resource announcements · 2018
    Article
  15. Article
  16. Draft genome sequence ofGenomics data · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Michael W HensonInstitute for Great Lakes Research and Department of Biology, Central Michigan University , Mount Pleasant, MI , United States.
Jorge W Santo DomingoNational Risk Management Research Laboratory, Environmental Protection Agency , Cincinnati, OH , USA.
Peter S KourtevDepartment of Biology, Central Michigan University , Mount Pleasant, MI , United States.
Roderick V JensenDepartment of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech) , Blacksburg, VA , United States.
James A DunnInstitute for Great Lakes Research and Department of Biology, Central Michigan University , Mount Pleasant, MI , United States.
Deric R LearmanInstitute for Great Lakes Research and Department of Biology, Central Michigan University , Mount Pleasant, MI , United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hexavalent chromium [Cr(VI)] is a soluble carcinogen that has caused widespread contamination of soil and water in many industrial nations. Bacteria have the potential to aid remediation as certain strains can catalyze the reduction of Cr(VI) to insoluble and less toxic Cr(III). Here, we examine Cr(VI) reducing Microbacterium spp. (Cr-K1W, Cr-K20, Cr-K29, and Cr-K32) isolated from contaminated sediment (Seymore, Indiana) and show varying chromate responses despite the isolates' phylogenetic similarity (i.e., identical 16S rRNA gene sequences). Detailed analysis identified differences based on genomic metabolic potential, growth and general metabolic capabilities, and capacity to resist and reduce Cr(VI). Taken together, the discrepancies between the isolates demonstrate the complexity inter-strain variation can have on microbial physiology and related biogeochemical processes.

Indexed as

Chromium reductionMicrobacteriumStrain-level variation

Identifiers

PMID26587353
PMCPMC4647564

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.