Evidence map›Paper›PMID 26586834›Full record

ArticlePlant physiology2016

Identification of Arabidopsis GPAT9 (At5g60620) as an Essential Gene Involved in Triacylglycerol Biosynthesis.

Jay Shockey, Anushobha Regmi, Kimberly Cotton, Neil Adhikari, John Browse, Philip D Bates

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 191 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Oil as a Hindrance to Oat (Foods (Basel, Switzerland) · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. Genome-wide association study and transcriptomic analysis reveal new genes for unsaturated fatty acid contents in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  9. Review
  10. Genome-wide analysis of theFrontiers in plant science · 2026
    Article
  11. Lipid regulation inFrontiers in plant science · 2026
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Genome-Wide Identification of the GPAT Family inPlants (Basel, Switzerland) · 2024
    Article
  19. Article
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jay ShockeyU.S. Department of Agriculture-Agricultural Research Service, Southern Regional Research Center, New Orleans, Louisiana 70124 (J.S.);Department of Chemistry and Biochemistry, University of Southern Mississippi, Hattiesburg, Mississippi 39406 (A.R., P.D.B.); andInstitute of Biological Chemistry, Washington State University, Pullman, Washington 99163 (K.C., N.A., J.B.).ORCID http://orcid.org/0000-0002-5057-5457
Anushobha RegmiU.S. Department of Agriculture-Agricultural Research Service, Southern Regional Research Center, New Orleans, Louisiana 70124 (J.S.);Department of Chemistry and Biochemistry, University of Southern Mississippi, Hattiesburg, Mississippi 39406 (A.R., P.D.B.); andInstitute of Biological Chemistry, Washington State University, Pullman, Washington 99163 (K.C., N.A., J.B.).ORCID http://orcid.org/0000-0003-1819-6147
Kimberly CottonU.S. Department of Agriculture-Agricultural Research Service, Southern Regional Research Center, New Orleans, Louisiana 70124 (J.S.);Department of Chemistry and Biochemistry, University of Southern Mississippi, Hattiesburg, Mississippi 39406 (A.R., P.D.B.); andInstitute of Biological Chemistry, Washington State University, Pullman, Washington 99163 (K.C., N.A., J.B.).ORCID http://orcid.org/0000-0003-0972-7671
Neil AdhikariU.S. Department of Agriculture-Agricultural Research Service, Southern Regional Research Center, New Orleans, Louisiana 70124 (J.S.);Department of Chemistry and Biochemistry, University of Southern Mississippi, Hattiesburg, Mississippi 39406 (A.R., P.D.B.); andInstitute of Biological Chemistry, Washington State University, Pullman, Washington 99163 (K.C., N.A., J.B.).ORCID http://orcid.org/0000-0002-2935-1870
John BrowseU.S. Department of Agriculture-Agricultural Research Service, Southern Regional Research Center, New Orleans, Louisiana 70124 (J.S.);Department of Chemistry and Biochemistry, University of Southern Mississippi, Hattiesburg, Mississippi 39406 (A.R., P.D.B.); andInstitute of Biological Chemistry, Washington State University, Pullman, Washington 99163 (K.C., N.A., J.B.).
Philip D BatesU.S. Department of Agriculture-Agricultural Research Service, Southern Regional Research Center, New Orleans, Louisiana 70124 (J.S.);Department of Chemistry and Biochemistry, University of Southern Mississippi, Hattiesburg, Mississippi 39406 (A.R., P.D.B.); andInstitute of Biological Chemistry, Washington State University, Pullman, Washington 99163 (K.C., N.A., J.B.) philip.bates@usm.edu.ORCID http://orcid.org/0000-0002-1291-3363
University of Southern Mississippi · USAgricultural Research Service · US

Funding

Training and Mentoring Core P20GM103476 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MICHAEL R GARRETT · 2012 to 2026
$60.2M
TRAINING IN BIOTECHNOLOGY: EMPHASIS ON PROTEIN CHEMISTRYT32GM008336 · NIGMS · WASHINGTON STATE UNIVERSITY · PI CALL, DOUGLAS R. · 1989 to 2023
$8.9M
NIGMS NIH HHS P20 GM103476NIGMS NIH HHS P20GM103476NIGMS NIH HHS T32 GM008336
6 · The paper itself

Abstract

The first step in the biosynthesis of nearly all plant membrane phospholipids and storage triacylglycerols is catalyzed by a glycerol-3-phosphate acyltransferase (GPAT). The requirement for an endoplasmic reticulum (ER)-localized GPAT for both of these critical metabolic pathways was recognized more than 60 years ago. However, identification of the gene(s) encoding this GPAT activity has remained elusive. Here, we present the results of a series of in vivo, in vitro, and in silico experiments in Arabidopsis (Arabidopsis thaliana) designed to assign this essential function to AtGPAT9. This gene has been highly conserved throughout evolution and is largely present as a single copy in most plants, features consistent with essential housekeeping functions. A knockout mutant of AtGPAT9 demonstrates both male and female gametophytic lethality phenotypes, consistent with the role in essential membrane lipid synthesis. Significant expression of developing seed AtGPAT9 is required for wild-type levels of triacylglycerol accumulation, and the transcript level is directly correlated to the level of microsomal GPAT enzymatic activity in seeds. Finally, the AtGPAT9 protein interacts with other enzymes involved in ER glycerolipid biosynthesis, suggesting the possibility of ER-localized lipid biosynthetic complexes. Together, these results suggest that GPAT9 is the ER-localized GPAT enzyme responsible for plant membrane lipid and oil biosynthesis.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsConserved SequenceEndoplasmic ReticulumGene Expression Regulation, PlantGene Knockout TechniquesGenes, EssentialGlycerol-3-Phosphate O-AcyltransferaseHomozygoteMembrane LipidsMutationPlants, Genetically ModifiedPollenSeedsTriglyceridesArabidopsis ProteinsGlycerol-3-Phosphate O-AcyltransferaseGPAT9 protein, ArabidopsisMembrane LipidsTriglycerides

Identifiers

PMID26586834
PMCPMC4704598
OpenAlexW2178665651

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.