ArticleNucleic acids research2016
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.
Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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Who cites it
43 citing papers in PubMed.
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- Online-adjusted evolutionary biclustering algorithm to identify significant modules in gene expression data.Briefings in bioinformatics · 2024Article
- Co-PATHOgenex web application for assessing complex stress responses in pathogenic bacteria.Microbiology spectrum · 2024Article
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- Efflux-linked accelerated evolution of antibiotic resistance at a population edge.Molecular cell · 2022Article
- Escherichia coli YigI is a Conserved Gammaproteobacterial Acyl-CoA Thioesterase Permitting Metabolism of Unusual Fatty Acid Substrates.Journal of bacteriology · 2022Article
- RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation inMicrobial genomics · 2022Article
- Curation, inference, and assessment of a globally reconstructed gene regulatory network for Streptomyces coelicolor.Scientific reports · 2022Article
- Using genome-wide expression compendia to study microorganisms.Computational and structural biotechnology journal · 2022Review
- A COMPASS for VESPUCCI: A FAIR Way to Explore the Grapevine Transcriptomic Landscape.Frontiers in plant science · 2022Article
- Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks using PRIME.NPJ systems biology and applications · 2021Article
- Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile.Cell host & microbe · 2021Article
- Predicting synchronized gene coexpression patterns from fibration symmetries in gene regulatory networks in bacteria.BMC bioinformatics · 2021Article
- Independent component analysis recovers consistent regulatory signals from disparate datasets.PLoS computational biology · 2021Article
- Differential expression of transcription factor- and further growth-related genes correlates with contrasting cluster architecture in Vitis vinifera 'Pinot Noir' and Vitis spp. genotypes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Survey and Validation of tRNA Modifications and Their Corresponding Genes inBiomolecules · 2020Article
Corrections and comments
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13 authors.
Funding
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Abstract
COLOMBOS is a database that integrates publicly available transcriptomics data for several prokaryotic model organisms. Compared to the previous version it has more than doubled in size, both in terms of species and data available. The manually curated condition annotation has been overhauled as well, giving more complete information about samples' experimental conditions and their differences. Functionality-wise cross-species analyses now enable users to analyse expression data for all species simultaneously, and identify candidate genes with evolutionary conserved expression behaviour. All the expression-based query tools have undergone a substantial improvement, overcoming the limit of enforced co-expression data retrieval and instead enabling the return of more complex patterns of expression behaviour. COLOMBOS is freely available through a web application at http://colombos.net/. The complete database is also accessible via REST API or downloadable as tab-delimited text files.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.