Evidence map›Paper›PMID 26586795›Full record

ArticleCarcinogenesis2016

Common genetic variation and survival after colorectal cancer diagnosis: a genome-wide analysis.

Amanda I Phipps, Michael N Passarelli, Andrew T Chan, Tabitha A Harrison, Jihyoun Jeon, Carolyn M Hutter, Sonja I Berndt, Hermann Brenner, Bette J Caan, Peter T Campbell and 25 more

Open access · bronzeAbstract read
In one paragraph

Article in Carcinogenesis, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Genetic Variant Associated With Survival of Patients With Stage II-III Colon Cancer.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2020
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 15 institutions in 4 countries.

Amanda I PhippsEpidemiology Department, University of Washington, Seattle, WA 98195, USA.
Michael N PassarelliEpidemiology Department, University of Washington, Seattle, WA 98195, USA.
Andrew T ChanDivision of Gastroenterology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA.
Tabitha A HarrisonPublic Health Sciences Division , Fred Hutchinson Cancer Research Center , Seattle , WA 98109 , USA.
Jihyoun JeonPublic Health Sciences Division , Fred Hutchinson Cancer Research Center , Seattle , WA 98109 , USA.
Carolyn M HutterPublic Health Sciences Division , Fred Hutchinson Cancer Research Center , Seattle , WA 98109 , USA.
Sonja I BerndtDivision of Cancer Epidemiology and Genetics , National Cancer Institute , National Institutes of Health , Bethesda , MD 20892 , USA.
Hermann BrennerDivision of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Bette J CaanDivision of Research , Kaiser Permanente Medical Care Program of Northern California , Oakland , CA 94612 , USA.
Peter T CampbellEpidemiology Research Program , American Cancer Society , Atlanta , GA 30303 , USA.
Jenny Chang-ClaudeDivision of Cancer Epidemiology , Unit of Genetic Epidemiology , German Cancer Research Center (DKFZ) , Heidelberg 69120 , Germany.
Stephen J ChanockDivision of Cancer Epidemiology and Genetics , National Cancer Institute , National Institutes of Health , Bethesda , MD 20892 , USA.
Jeremy P CheadleInstitute of Cancer and Genetics , School of Medicine , Cardiff University , Cardiff CF14 4XN , UK.
Keith R CurtisPublic Health Sciences Division , Fred Hutchinson Cancer Research Center , Seattle , WA 98109 , USA.
David DugganTranslational Genomics Research Institute , Phoenix , AZ 85004 , USA.
David FisherMRC Clinical Trials Unit , University College London , Aviation House , London WC2B 6NH , UK.
Charles S FuchsChanning Division of Network Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA.
Manish GalaHarvard School of Public Health , Boston , MA 02115 , USA.
Edward L GiovannucciChanning Division of Network Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA.
Richard B HayesDivision of Epidemiology , Department of Population Health , New York University School of Medicine , New York , NY 10016 , USA.
Michael HoffmeisterGerman Cancer Consortium (DKTK) , Heidelberg 69120 , Germany.
Li HsuPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Eric J JacobsDivision of Cancer Epidemiology , Unit of Genetic Epidemiology , German Cancer Research Center (DKFZ) , Heidelberg 69120 , Germany.
Lina JansenDivision of Clinical Epidemiology and Aging Research , German Cancer Research Center (DKFZ) , Heidelberg 69120 , Germany.
Richard KaplanMRC Clinical Trials Unit , University College London , Aviation House , London WC2B 6NH , UK.
Elisabeth J KapDivision of Cancer Epidemiology , Unit of Genetic Epidemiology , German Cancer Research Center (DKFZ) , Heidelberg 69120 , Germany.
Timothy S MaughanGray Institute for Radiation Oncology and Biology , University of Oxford , Oxford OX3 7DQ , UK.
John D PotterEpidemiology Department, University of Washington, Seattle, WA 98195, USA.
Robert E SchoenDepartment of Medicine and Epidemiology , University of Pittsburgh Medical Center , Pittsburgh , PA 15213 , USA.
Daniela SeminaraDivision of Cancer Control and Population Sciences , National Cancer Institute , National Institutes of Health , Bethesda , MD 20892 , USA , and.
Martha L SlatteryDepartment of Internal Medicine , University of Utah Health Sciences Center , Salt Lake City , UT 84132 , USA.
Hannah WestInstitute of Cancer and Genetics , School of Medicine , Cardiff University , Cardiff CF14 4XN , UK.
Emily WhiteEpidemiology Department, University of Washington, Seattle, WA 98195, USA.
Ulrike PetersEpidemiology Department, University of Washington, Seattle, WA 98195, USA.
Polly A NewcombEpidemiology Department, University of Washington, Seattle, WA 98195, USA.
Fred Hutch Cancer Center · USGerman Cancer Research Center · DEUniversity of Washington · USHarvard University Press · USNational Institutes of Health · USCardiff University · GBUniversity College London · GBAmerican Cancer Society · USBrigham and Women's Hospital · USKaiser Permanente · USNew York University · USTranslational Genomics Research Institute · USUniversity of Oxford · GBUniversity of Pittsburgh · USUniversity of Utah · US

Funding

Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI TWOROGER, SHELLEY S · 2000 to 2019
$77.8M
Validity of Diet and Activity Measures in WomenP01CA055075 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI FUCHS, CHARLES S · 1991 to 2009
$41.8M
Tissue and Pathology ResourcesP50CA127003 · NCI · DANA-FARBER CANCER INST · PI EL-BARDEESY, NABEEL, SELLERS, WILLIAM R · 2007 to 2023
$33.2M
Molecular pathological epidemiology of colorectal cancerU01CA137088 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 2009 to 2018
$21.8M
Detection of Colorectal Cancer Susceptibility Loci Using Genome-Wide SequencingU01CA164930 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 2012 to 2015
$12.4M
Cancer Epidemiology Cohort in Male Health ProfessionalsUM1CA167552 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI WILLETT, WALTER C. · 2012 to 2016
$11.5M
Genome-Wide Association Study of Nonsynonymous SNPs in Colon CancerR01CA059045 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 1994 to 2011
$11.5M
Transdisciplinary Studies of Genetic Variation in Colorectal CancerU19CA148107 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GRUBER, STEPHEN B · 2010 to 2014
$11.1M
Developing Data-Driven Cancer ResearchersT32CA009168 · NCI · UNIVERSITY OF WASHINGTON · PI STEPHEN M SCHWARTZ, MICHAEL Chiao-An WU · 1985 to 2026
$10.1M
DIET, ACTIVITY &REPRODUCTION--RISKS FOR RECTAL CANCERR01CA048998 · NCI · UNIVERSITY OF UTAH · PI SLATTERY, MARTHA L · 1991 to 2012
$7.9M
Cancer Prevention Trng-Nutrition, Exercise &GeneticsR25CA094880 · NCI · UNIVERSITY OF WASHINGTON · PI WHITE, EMILY · 2002 to 2016
$7.3M
Inflammation and Colorectal NeoplasiaR01CA137178 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI CHAN, ANDREW T · 2009 to 2019
$6.5M
Cancer Research UKIntramural NIH HHSMedical Research Council G0701770Medical Research Council MC_U122861325Medical Research Council MC_UU_12023/20Medical Research Council MC_UU_12023/3NCI NIH HHS K05 CA152715NCI NIH HHS K05CA152715NCI NIH HHS K05 CA154337NCI NIH HHS K05CA154337NCI NIH HHS K07 CA172298NCI NIH HHS K07CA172298NCI NIH HHS P01 CA055075NCI NIH HHS P01CA055075NCI NIH HHS P01 CA087969NCI NIH HHS P01CA087969NCI NIH HHS P50 CA127003NCI NIH HHS P50CA127003NCI NIH HHS R01 CA042182NCI NIH HHS R01 CA048998NCI NIH HHS R01 CA059045NCI NIH HHS R01CA059045NCI NIH HHS R01 CA137178NCI NIH HHS R01CA137178NCI NIH HHS R01 CA169141NCI NIH HHS R01 CA176272NCI NIH HHS R01CA42182NCI NIH HHS R01 CA48998NCI NIH HHS R25 CA094880NCI NIH HHS R25CA094880NCI NIH HHS T32 CA009168NCI NIH HHS T32CA009168NCI NIH HHS U01 CA137088NCI NIH HHS U01CA137088NCI NIH HHS U01 CA164930NCI NIH HHS U19 CA148107NCI NIH HHS U19CA148107NCI NIH HHS UM1 CA167552NCI NIH HHS UM1CA167552NIDDK NIH HHS K24 DK098311NIDDK NIH HHS K24DK098311NIH HHS S10 OD020069
6 · The paper itself

Abstract

Genome-wide association studies have identified several germline single nucleotide polymorphisms (SNPs) significantly associated with colorectal cancer (CRC) incidence. Common germline genetic variation may also be related to CRC survival. We used a discovery-based approach to identify SNPs related to survival outcomes after CRC diagnosis. Genome-wide genotyping arrays were conducted for 3494 individuals with invasive CRC enrolled in six prospective cohort studies (median study-specific follow-up = 4.2-8.1 years). In pooled analyses, we used Cox regression to assess SNP-specific associations with CRC-specific and overall survival, with additional analyses stratified by stage at diagnosis. Top findings were followed-up in independent studies. A P value threshold of P < 5×10(-8) in analyses combining discovery and follow-up studies was required for genome-wide significance. Among individuals with distant-metastatic CRC, several SNPs at 6p12.1, nearest the ELOVL5 gene, were statistically significantly associated with poorer survival, with the strongest associations noted for rs209489 [hazard ratio (HR) = 1.8, P = 7.6×10(-10) and HR = 1.8, P = 3.7×10(-9) for CRC-specific and overall survival, respectively). No SNPs were statistically significantly associated with survival among all cases combined or in cases without distant-metastases. SNPs in 6p12.1/ELOVL5 were associated with survival outcomes in individuals with distant-metastatic CRC, and merit further follow-up for functional significance. Findings from this genome-wide association study highlight the potential importance of genetic variation in CRC prognosis and provide clues to genomic regions of potential interest.

Indexed as

AgedAged, 80 and overCohort StudiesColorectal NeoplasmsFemaleGenetic VariationGenome-Wide Association StudyHumansMaleMiddle AgedPrognosisProspective Studies

Identifiers

PMID26586795
PMCPMC4715234
OpenAlexW2175332478

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.