Evidence map›Paper›PMID 26586179›Full record

ArticleScientific reports2015

Mycobacterial infection induces a specific human innate immune response.

John D Blischak, Ludovic Tailleux, Amy Mitrano, Luis B Barreiro, Yoav Gilad

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 77 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

John D BlischakDepartment of Human Genetics, University of Chicago, Chicago, Illinois, USA.
Ludovic TailleuxMycobacterial Genetics Unit, Institut Pasteur, Paris, France.
Amy MitranoDepartment of Human Genetics, University of Chicago, Chicago, Illinois, USA.
Luis B BarreiroDepartment of Genetics, CHU Sainte-Justine Research Center, Montreal, Québec, Canada.
Yoav GiladDepartment of Human Genetics, University of Chicago, Chicago, Illinois, USA.
University of Chicago · USCentre Hospitalier Universitaire Sainte-Justine · CAInstitut Pasteur · FR

Funding

Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
Mapping eQTLs that affect susceptibility to TuberculosisR01AI087658 · NIAID · UNIVERSITY OF CHICAGO · PI GILAD, YOAV · 2011 to 2015
$2.7M
NCATS NIH HHS UL1 TR000430NIAID NIH HHS AI087658NIAID NIH HHS R01 AI087658NIGMS NIH HHS T32 GM007197
6 · The paper itself

Abstract

The innate immune system provides the first response to infection and is now recognized to be partially pathogen-specific. Mycobacterium tuberculosis (MTB) is able to subvert the innate immune response and survive inside macrophages. Curiously, only 5-10% of otherwise healthy individuals infected with MTB develop active tuberculosis (TB). We do not yet understand the genetic basis underlying this individual-specific susceptibility. Moreover, we still do not know which properties of the innate immune response are specific to MTB infection. To identify immune responses that are specific to MTB, we infected macrophages with eight different bacteria, including different MTB strains and related mycobacteria, and studied their transcriptional response. We identified a novel subset of genes whose regulation was affected specifically by infection with mycobacteria. This subset includes genes involved in phagosome maturation, superoxide production, response to vitamin D, macrophage chemotaxis, and sialic acid synthesis. We suggest that genetic variants that affect the function or regulation of these genes should be considered candidate loci for explaining TB susceptibility.

Indexed as

Bayes TheoremCells, CulturedGene ExpressionGene Expression ProfilingGene OntologyGenetic Predisposition to DiseaseHost-Pathogen InteractionsHumansImmunity, InnateMacrophagesMycobacterium bovisMycobacterium smegmatisMycobacterium tuberculosisPrincipal Component AnalysisQuantitative Trait LociSalmonella typhimurium

Identifiers

PMID26586179
PMCPMC4653619
OpenAlexW2951829289

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.