Evidence map›Paper›PMID 26585824›Full record

ArticleG3 (Bethesda, Md.)2015

Identification of a Novel Nematotoxic Protein by Challenging the Model Mushroom Coprinopsis cinerea with a Fungivorous Nematode.

David Fernando Plaza, Stefanie Sofia Schmieder, Anna Lipzen, Erika Lindquist, Markus Künzler

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  3. UsingBiochemistry · 2024
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  4. UsingbioRxiv : the preprint server for biology · 2023
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  5. A lectin gene is involved in the defense ofFrontiers in microbiology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Applied and environmental microbiology · 2019
    Article
  12. Journal of fungi (Basel, Switzerland) · 2018
    Review
  13. Article
  14. Review
  15. Article
  16. Wheat flour, an inexpensive medium forCurrent research in environmental & applied mycology. Journal of fungal biology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

David Fernando PlazaInstitute of Microbiology, Department of Biology, ETH Zürich, 8093 Zürich, Switzerland.
Stefanie Sofia SchmiederInstitute of Microbiology, Department of Biology, ETH Zürich, 8093 Zürich, Switzerland.
Anna LipzenGenomic Technologies, Joint Genome Institute, Walnut Creek, California 94598.
Erika LindquistGenomic Technologies, Joint Genome Institute, Walnut Creek, California 94598.
Markus KünzlerInstitute of Microbiology, Department of Biology, ETH Zürich, 8093 Zürich, Switzerland mkuenzle@ethz.ch.
ETH Zurich · CHJoint Genome Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The dung of herbivores, the natural habitat of the model mushroom Coprinopsis cinerea, is a nutrient-rich but also very competitive environment for a saprophytic fungus. We showed previously that C. cinerea expresses constitutive, tissue-specific armories against antagonists such as animal predators and bacterial competitors. In order to dissect the inducible armories against such antagonists, we sequenced the poly(A)-positive transcriptome of C. cinerea vegetative mycelium upon challenge with fungivorous and bacterivorous nematodes, Gram-negative and Gram-positive bacteria and mechanical damage. As a response to the fungivorous nematode Aphelenchus avenae, C. cinerea was found to specifically induce the transcription of several genes encoding previously characterized nematotoxic lectins. In addition, a previously not characterized gene encoding a cytoplasmic protein with several predicted Ricin B-fold domains, was found to be strongly upregulated under this condition. Functional analysis of the recombinant protein revealed a high toxicity toward the bacterivorous nematode Caenorhabditis elegans. Challenge of the mycelium with A. avenae also lead to the induction of several genes encoding putative antibacterial proteins. Some of these genes were also induced upon challenge of the mycelium with the bacteria Escherichia coli and Bacillus subtilis. These results suggest that fungi have the ability to induce specific innate defense responses similar to plants and animals.

Indexed as

AntibiosisNematodaAgaricalesAnimalsComputational BiologyFungal ProteinsGene Expression ProfilingHigh-Throughput Nucleotide SequencingStress, PhysiologicalTranscriptomeFungal ProteinsbasidiomyceteCCTX2fungal defenseRNA sequencingtranscriptomics

Identifiers

PMID26585824
PMCPMC4704728
OpenAlexW2222068065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.