Evidence map›Paper›PMID 26583751›Full record

ArticleeLife2015

CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling.

C Keith Cassidy, Benjamin A Himes, Frances J Alvarez, Jun Ma, Gongpu Zhao, Juan R Perilla, Klaus Schulten, Peijun Zhang

Abstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed.

  1. Article
  2. Signaling mechanism of the transmembrane energy receptor Aer.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Structure and signaling mechanism ofbioRxiv : the preprint server for biology · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. The structural logic of dynamic signaling in the Escherichia coli serine chemoreceptor.Protein science : a publication of the Protein Society · 2024
    Article
  10. Article
  11. The Structural Logic of Dynamic Signaling in thebioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Bacterial chemoreceptor signaling complexes control kinase activity by stabilizing the catalytic domain of CheA.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Recent structural advances in bacterial chemotaxis signalling.Current opinion in structural biology · 2023
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

C Keith CassidyDepartment of Physics and Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, United States.
Benjamin A HimesDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, United States.
Frances J AlvarezDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, United States.
Jun MaDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, United States.
Gongpu ZhaoDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, United States.
Juan R PerillaDepartment of Physics and Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, United States.
Klaus SchultenDepartment of Physics and Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, United States.
Peijun ZhangDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, United States.

Funding

WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Structure and function of membrane receptor signaling complex in bacterial chemotR01GM085043 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZHANG, PEIJUN · 2009 to 2013
$1.4M
Commodity Hardware Acceleration of Popular Modeling Software for Structural BioloR01GM098243 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SCHULTEN, KLAUS · 2011 to 2014
$1.2M
Cryo-FIB processing of vitreous biological specimen for electron tomographyR21RR024424 · NCRR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZHANG, PEIJUN · 2009 to 2010
$546k
NCRR NIH HHS R21 RR024424NIGMS NIH HHS P41 GM104601NIGMS NIH HHS R01 GM085043NIGMS NIH HHS R01 GM098243
6 · The paper itself

Abstract

Chemotactic responses in bacteria require large, highly ordered arrays of sensory proteins to mediate the signal transduction that ultimately controls cell motility. A mechanistic understanding of the molecular events underlying signaling, however, has been hampered by the lack of a high-resolution structural description of the extended array. Here, we report a novel reconstitution of the array, involving the receptor signaling domain, histidine kinase CheA, and adaptor protein CheW, as well as a density map of the core-signaling unit at 11.3 Å resolution, obtained by cryo-electron tomography and sub-tomogram averaging. Extracting key structural constraints from our density map, we computationally construct and refine an atomic model of the core array structure, exposing novel interfaces between the component proteins. Using all-atom molecular dynamics simulations, we further reveal a distinctive conformational change in CheA. Mutagenesis and chemical cross-linking experiments confirm the importance of the conformational dynamics of CheA for chemotactic function.

Indexed as

biophysicscomputational biologyE. colistructural biologysystems biology

Identifiers

PMID26583751
PMCPMC6746300

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.