ArticleNucleic acids research2016
EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data.
Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
46 citing papers in PubMed, 1 synthesis or guideline pooled it.
- MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations.BMC bioinformatics · 2019Pooled it
- Virome profiling of Aedes albopictus across urban ecosystems in Guangdong reveals sex-specific diversity.Parasites & vectors · 2025Article
- A Review of Web-Based Metagenomics Platforms for Analysing Next-Generation Sequence Data.Biochemical genetics · 2024Review
- A Pipeline for Constructing Reference Genomes for Large Cohort-Specific Metagenome Compression.Microorganisms · 2023Article
- MetaGeneBank: a standardized database to study deep sequenced metagenomic data from human fecal specimen.BMC microbiology · 2021Article
- Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals.Microbiome · 2021Article
- Functional metagenomics reveals differential chitin degradation and utilization features across free-living and host-associated marine microbiomes.Microbiome · 2021Article
- Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems.Frontiers in microbiology · 2021Article
- Environmental prospecting of black yeast-like agents of human disease using culture-independent methodology.Scientific reports · 2020Article
- A comprehensive survey of integron-associated genes present in metagenomes.BMC genomics · 2020Article
- Rhizosphere microbiome: Engineering bacterial competitiveness for enhancing crop production.Journal of advanced research · 2020Review
- Chemical and microbial diversity covary in fresh water to influence ecosystem functioning.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- The MG-RAST API explorer: an on-ramp for RESTful query composition.BMC bioinformatics · 2019Article
- Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives.Marine drugs · 2019Review
- Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime.Microbial ecology · 2019Article
- MG-RAST version 4-lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis.Briefings in bioinformatics · 2019Article
- Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome.Scientific reports · 2019Article
- Article
- Shotgun Metagenomics Reveals the Benthic Microbial Community Response to Plastic and Bioplastic in a Coastal Marine Environment.Frontiers in microbiology · 2019Article
- The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant.FEMS microbiology ecology · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors.
Funding
Abstract
EBI metagenomics (https://www.ebi.ac.uk/metagenomics/) is a freely available hub for the analysis and archiving of metagenomic and metatranscriptomic data. Over the last 2 years, the resource has undergone rapid growth, with an increase of over five-fold in the number of processed samples and consequently represents one of the largest resources of analysed shotgun metagenomes. Here, we report the status of the resource in 2016 and give an overview of new developments. In particular, we describe updates to data content, a complete overhaul of the analysis pipeline, streamlining of data presentation via the website and the development of a new web based tool to compare functional analyses of sequence runs within a study. We also highlight two of the higher profile projects that have been analysed using the resource in the last year: the oceanographic projects Ocean Sampling Day and Tara Oceans.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.