Evidence map›Paper›PMID 26582818›Full record

ArticleBioscience reports2015

Biochemical and structural characterization of polyphosphate kinase 2 from the intracellular pathogen Francisella tularensis.

Laura E Batten, Alice E Parnell, Neil J Wells, Amber L Murch, Petra C F Oyston, Peter L Roach

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Polyphosphate Kinase fromInternational journal of molecular sciences · 2024
    Article
  4. Article
  5. A Multi-enzyme Cascade for the Biosynthesis of AICA Ribonucleoside Di- and Triphosphate.Chembiochem : a European journal of chemical biology · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. A bicyclicRSC chemical biology · 2021
    Article
  11. Article
  12. Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. [Expression of Proteus mirabilis polyphosphate kinase and preparation of its polyclonal antibodies].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Laura E BattenDepartment of Chemistry, University of Southampton, Southampton, SO17 1BJ, U.K.
Alice E ParnellDepartment of Chemistry, University of Southampton, Southampton, SO17 1BJ, U.K.
Neil J WellsDepartment of Chemistry, University of Southampton, Southampton, SO17 1BJ, U.K.
Amber L MurchDepartment of Chemistry, University of Southampton, Southampton, SO17 1BJ, U.K. Defence Science and Technology Laboratory, Porton Down, Salisbury, SP4 OJQ, U.K.
Petra C F OystonInstitute for Life Sciences, University of Southampton, Southampton, SO17 1BJ, U.K. Defence Science and Technology Laboratory, Porton Down, Salisbury, SP4 OJQ, U.K.
Peter L RoachDepartment of Chemistry, University of Southampton, Southampton, SO17 1BJ, U.K. Institute for Life Sciences, University of Southampton, Southampton, SO17 1BJ, U.K. plr2@soton.ac.uk.
University of Southampton · GBDefence Science and Technology Laboratory · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The metabolism of polyphosphate is important for the virulence of a wide range of pathogenic bacteria and the enzymes of polyphosphate metabolism have been proposed as an anti-bacterial target. In the intracellular pathogen Francisella tularensis, the product of the gene FTT1564 has been identified as a polyphosphate kinase from the polyphosphate kinase 2 (PPK2) family. The isogenic deletion mutant was defective for intracellular growth in macrophages and was attenuated in mice, indicating an important role for polyphosphate in the virulence of Francisella. Herein, we report the biochemical and structural characterization of F. tularensis polyphosphate kinase (FtPPK2) with a view to characterizing the enzyme as a novel target for inhibitors. Using an HPLC-based activity assay, the substrate specificity of FtPPK2 was found to include purine but not pyrimidine nts. The activity was also measured using (31)P-NMR. FtPPK2 has been crystallized and the structure determined to 2.23 Å (1 Å=0.1 nm) resolution. The structure consists of a six-stranded parallel β-sheet surrounded by 12 α-helices, with a high degree of similarity to other members of the PPK2 family and the thymidylate kinase superfamily. Residues proposed to be important for substrate binding and catalysis have been identified in the structure, including a lid-loop and the conserved Walker A and B motifs. The ΔFTT1564 strain showed significantly increased sensitivity to a range of antibiotics in a manner independent of the mode of action of the antibiotic. This combination of biochemical, structural and microbiological data provide a sound foundation for future studies targeting the development of PPK2 small molecule inhibitors.

Indexed as

AnimalsBacterial ProteinsCrystallography, X-RayFrancisella tularensisMicePhosphotransferases (Phosphate Group Acceptor)Protein Structure, SecondaryBacterial ProteinsPhosphotransferases (Phosphate Group Acceptor)polyphosphate kinaseantibiotic sensitivityenzyme kineticsFrancisella tularensiskinasepolyphosphateX-ray crystallography

Identifiers

PMID26582818
PMCPMC4748334
OpenAlexW2255376588

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.