Evidence map›Paper›PMID 26582400›Full record

ArticleFrontiers in plant science2015

Short day transcriptomic programming during induction of dormancy in grapevine.

Anne Y Fennell, Karen A Schlauch, Satyanarayana Gouthu, Laurent G Deluc, Vedbar Khadka, Lekha Sreekantan, Jerome Grimplet, Grant R Cramer, Katherine L Mathiason

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Anne Y FennellNorthern Plains BioStress Laboratory, Plant Science Department, South Dakota State University Brookings, SD, USA.
Karen A SchlauchDepartment of Biochemistry and Molecular Biology, University of Nevada, Reno Reno, NV, USA.
Satyanarayana GouthuDepartment of Horticulture, Oregon State University Corvallis, OR, USA.
Laurent G DelucDepartment of Horticulture, Oregon State University Corvallis, OR, USA.
Vedbar KhadkaNorthern Plains BioStress Laboratory, Plant Science Department, South Dakota State University Brookings, SD, USA.
Lekha SreekantanNorthern Plains BioStress Laboratory, Plant Science Department, South Dakota State University Brookings, SD, USA.
Jerome GrimpletInstituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja) Logroño, Spain.
Grant R CramerDepartment of Biochemistry and Molecular Biology, University of Nevada, Reno Reno, NV, USA.
Katherine L MathiasonNorthern Plains BioStress Laboratory, Plant Science Department, South Dakota State University Brookings, SD, USA.
South Dakota State University · USOregon State University · USUniversity of Nevada, Reno · USGobierno de La Rioja · ES

Funding

Outreach/Diversity/Pipeline ProjectP20GM103440 · NIGMS · UNIVERSITY OF NEVADA RENO · PI Eduardo A Robleto · 2012 to 2026
$58.0M
NIGMS NIH HHS P20 GM103440
6 · The paper itself

Abstract

Bud dormancy in grapevine is an adaptive strategy for the survival of drought, high and low temperatures and freeze dehydration stress that limit the range of cultivar adaptation. Therefore, development of a comprehensive understanding of the biological mechanisms involved in bud dormancy is needed to promote advances in selection and breeding, and to develop improved cultural practices for existing grape cultivars. The seasonally indeterminate grapevine, which continuously develops compound axillary buds during the growing season, provides an excellent system for dissecting dormancy, because the grapevine does not transition through terminal bud development prior to dormancy. This study used gene expression patterns and targeted metabolite analysis of two grapevine genotypes that are short photoperiod responsive (Vitis riparia) and non-responsive (V. hybrid, Seyval) for dormancy development to determine differences between bud maturation and dormancy commitment. Grapevine gene expression and metabolites were monitored at seven time points under long (LD, 15 h) and short (SD, 13 h) day treatments. The use of age-matched buds and a small (2 h) photoperiod difference minimized developmental differences and allowed us to separate general photoperiod from dormancy specific gene responses. Gene expression profiles indicated three distinct phases (perception, induction and dormancy) in SD-induced dormancy development in V. riparia. Different genes from the NAC DOMAIN CONTAINING PROTEIN 19 and WRKY families of transcription factors were differentially expressed in each phase of dormancy. Metabolite and transcriptome analyses indicated ABA, trehalose, raffinose and resveratrol compounds have a potential role in dormancy commitment. Finally, a comparison between V. riparia compound axillary bud dormancy and dormancy responses in other species emphasized the relationship between dormancy and the expression of RESVERATROL SYNTHASE and genes associated with C3HC4-TYPE RING FINGER and NAC DOMAIN CONTAINING PROTEIN 19 transcription factors.

Indexed as

ABAbudraffinoseresveratrolSeyvaltrehaloseVitisNetVitis riparia

Identifiers

PMID26582400
PMCPMC4632279
OpenAlexW2196157991

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.