Evidence map›Paper›PMID 26582021›Full record

ArticleProceedings. Biological sciences2015

Spectral shifts of mammalian ultraviolet-sensitive pigments (short wavelength-sensitive opsin 1) are associated with eye length and photic niche evolution.

Christopher A Emerling, Hieu T Huynh, Minh A Nguyen, Robert W Meredith, Mark S Springer

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings. Biological sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 74 citations in OpenAlex.

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  18. Spectral sensitivity of cone vision in the diurnal muridThe Journal of experimental biology · 2020
    Article
  19. Convergent spectral shifts to blue-green vision in mammals extends the known sensitivity of vertebrate M/LWS pigments.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Christopher A EmerlingDepartment of Biology, University of California Riverside, Riverside, CA, USA Museum of Vertebrate Zoology, University of California Berkeley, Berkeley, CA, USA caemerling@berkeley.edu.
Hieu T HuynhDepartment of Biology, University of California Riverside, Riverside, CA, USA School of Pharmacy, Loma Linda University, Loma Linda, CA, USA.
Minh A NguyenDepartment of Biology, University of California Riverside, Riverside, CA, USA School of Pharmacy, Loma Linda University, Loma Linda, CA, USA.
Robert W MeredithDepartment of Biology, University of California Riverside, Riverside, CA, USA Department of Biology and Molecular Biology, Montclair State University, Montclair, NJ, USA.
Mark S SpringerDepartment of Biology, University of California Riverside, Riverside, CA, USA mark.springer@ucr.edu.
Loma Linda University · USMontclair State University · USUniversity of California, Berkeley · USUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinal opsin photopigments initiate mammalian vision when stimulated by light. Most mammals possess a short wavelength-sensitive opsin 1 (SWS1) pigment that is primarily sensitive to either ultraviolet or violet light, leading to variation in colour perception across species. Despite knowledge of both ultraviolet- and violet-sensitive SWS1 classes in mammals for 25 years, the adaptive significance of this variation has not been subjected to hypothesis testing, resulting in minimal understanding of the basis for mammalian SWS1 spectral tuning evolution. Here, we gathered data on SWS1 for 403 mammal species, including novel SWS1 sequences for 97 species. Ancestral sequence reconstructions suggest that the most recent common ancestor of Theria possessed an ultraviolet SWS1 pigment, and that violet-sensitive pigments evolved at least 12 times in mammalian history. We also observed that ultraviolet pigments, previously considered to be a rarity, are common in mammals. We then used phylogenetic comparative methods to test the hypotheses that the evolution of violet-sensitive SWS1 is associated with increased light exposure, extended longevity and longer eye length. We discovered that diurnal mammals and species with longer eyes are more likely to have violet-sensitive pigments and less likely to possess UV-sensitive pigments. We hypothesize that (i) as mammals evolved larger body sizes, they evolved longer eyes, which limited transmittance of ultraviolet light to the retina due to an increase in Rayleigh scattering, and (ii) as mammals began to invade diurnal temporal niches, they evolved lenses with low UV transmittance to reduce chromatic aberration and/or photo-oxidative damage.

Indexed as

Biological EvolutionLightLongevityAnimalsEvolution, MolecularEyeMammalsMolecular Sequence DataPhylogenyRod OpsinsSequence Analysis, DNARod Opsinsshort-wavelength opsincolour visionMammaliaopsinshort wavelength-sensitive opsin 1ultraviolet vision

Identifiers

PMID26582021
PMCPMC4685808
OpenAlexW2271114662

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.