Evidence map›Paper›PMID 26581482›Full record

ArticleBMC research notes2015

Focused molecular analysis of small cell lung cancer: feasibility in routine clinical practice.

Fatma Abdelraouf, Adam Sharp, Manisha Maurya, Debbie Mair, Andrew Wotherspoon, Alex Leary, David Gonzalez de Castro, Jaishree Bhosle, Ayatallah Nassef, Taghrid Gaafar and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Fatma AbdelraoufLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. fatma.abdelraouf@nhs.net.
Adam SharpLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. adam.sharp@rmh.nhs.uk.
Manisha MauryaLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. manisha.maurya@icr.ac.uk.
Debbie MairLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. debbie.mair@icr.ac.uk.
Andrew WotherspoonLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. andrew.wotherspoon@rmh.nhs.uk.
Alex LearyLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. leary.alex@gmail.com.
David Gonzalez de CastroLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. david.gonzalez-de-castro@icr.ac.uk.
Jaishree BhosleLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. jaishree.bhosle@rmh.nhs.uk.
Ayatallah NassefLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. aya_nasef4g@hotmail.com.
Taghrid GaafarLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. tagrid8@yahoo.com.
Sanjay PopatLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. sanjay.popat@rmh.nhs.uk.
Timothy A YapLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. timothy.yap@icr.ac.uk.
Mary O'BrienLung Cancer Unit, Department of Medicine, Royal Marsden NHS Foundation Trust, Downs Road, Sutton, London, SM2 5PT, UK. mary.obrien@rmh.nhs.uk.
Royal Marsden NHS Foundation Trust · GBCairo University · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThere is an urgent need to identify molecular signatures in small cell lung cancer (SCLC) that may select patients who are likely to respond to molecularly targeted therapies. In this study, we investigate the feasibility of undertaking focused molecular analyses on routine diagnostic biopsies in patients with SCLC.

methodsA series of histopathologically confirmed formalin-fixed, paraffin-embedded SCLC specimens were analysed for epidermal growth factor receptors (EGFR), KRAS, NRAS and BRAF mutations, ALK gene rearrangements and MET amplification. EGFR and KRAS mutation testing was evaluated using real time polymerase chain reaction (RT-PCR cobas(®)), BRAF and NRAS mutations using multiplex PCR and capillary electrophoresis-single strand conformation analysis, and ALK and MET aberrations with fluorescent in situ hybridization. All genetic aberrations detected were validated independently.

resultsA total of 105 patients diagnosed with SCLC between July 1990 and September 2006 were included. 60 (57 %) patients had suitable tumour tissue for molecular testing. 25 patients were successfully evaluated for all six pre-defined molecular aberrations. Eleven patients failed all molecular analysis. No mutations in EGFR, KRAS and NRAS were detected, and no ALK gene rearrangements or MET gene amplifications were identified. A V600E substitution in BRAF was detected in a Caucasian male smoker diagnosed with SCLC with squamoid and glandular features.

conclusionThe paucity of patients with sufficient tumour tissue, quality of DNA extracted and low frequency of aberrations detected indicate that alternative molecular characterisation approaches are necessary, such as the use of circulating plasma DNA in patients with SCLC.

Indexed as

MutationAgedAged, 80 and overAnaplastic Lymphoma KinaseDNA Mutational AnalysisErbB ReceptorsFeasibility StudiesFemaleGenetic Predisposition to DiseaseGTP PhosphohydrolasesHumansImmunohistochemistryIn Situ Hybridization, FluorescenceLung NeoplasmsMaleMembrane ProteinsALK protein, humanAnaplastic Lymphoma KinaseBRAF protein, humanEGFR protein, humanErbB ReceptorsGTP PhosphohydrolasesKRAS protein, humanMembrane ProteinsMET protein, humanNRAS protein, humanProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-metProto-Oncogene Proteins p21(ras)Receptor Protein-Tyrosine Kinases

Identifiers

PMID26581482
PMCPMC4652351
OpenAlexW2179767114

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.