Evidence map›Paper›PMID 26581097›Full record

ArticlePloS one2015

Improved Detection of Invasive Pulmonary Aspergillosis Arising during Leukemia Treatment Using a Panel of Host Response Proteins and Fungal Antigens.

Allan R Brasier, Yingxin Zhao, Heidi M Spratt, John E Wiktorowicz, Hyunsu Ju, L Joseph Wheat, Lindsey Baden, Susan Stafford, Zheng Wu, Nicolas Issa and 8 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 3 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 3 syntheses or guidelines pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. Article
  6. Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2019
    Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 2 countries.

Allan R BrasierDepartment of Internal Medicine, University of Texas Medical Branch (UTMB), Galveston, TX, United States of America.
Yingxin ZhaoDepartment of Internal Medicine, University of Texas Medical Branch (UTMB), Galveston, TX, United States of America.
Heidi M SprattInstitute for Translational Sciences, UTMB, Galveston, TX, United States of America.
John E WiktorowiczInstitute for Translational Sciences, UTMB, Galveston, TX, United States of America.
Hyunsu JuInstitute for Translational Sciences, UTMB, Galveston, TX, United States of America.
L Joseph WheatMiraVista Laboratories, Indianapolis, IN, United States of America.
Lindsey BadenHarvard University, Boston, MA, United States of America.
Susan StaffordBiomolecular Resource Facility, UTMB, Galveston, TX, United States of America.
Zheng WuBiomolecular Resource Facility, UTMB, Galveston, TX, United States of America.
Nicolas IssaHarvard University, Boston, MA, United States of America.
Angela M CaliendoAlpert Medical School of Brown University, Providence, RI, USA.
David W DenningUniversity of Manchester, Manchester, United Kingdom.
Kizhake SomanSealy Center for Molecular Medicine, UTMB, Galveston, TX, United States of America.
Cornelius J ClancyUniversity of Pittsburgh, Pittsburgh, United States of America.
M Hong NguyenUniversity of Florida, Gainesville, FLA, United States of America.
Michele W SugrueUniversity of Florida, Gainesville, FLA, United States of America.
Barbara D AlexanderDuke University Medical Center, Durham, NC, United States of America.
John R WingardUniversity of Florida, Gainesville, FLA, United States of America.
John Sealy Hospital · USUniversity of Florida · USHarvard University · USBrown University · USDuke Medical Center · USGalveston College · USThe University of Texas Medical Branch at Galveston · USUniversity of Manchester · GBUniversity of Pittsburgh · US

Funding

Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
UTMB Clinical and Translational Science AwardUL1TR000071 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BRASIER, ALLAN R. · 2012 to 2014
$14.4M
NCATS NIH HHS UL1 TR000071NCATS NIH HHS UL1TR000071NIAID NIH HHS HHSN272200800048CNIEHS NIH HHS P30 ES006676PHS HHS HHSN266200700023C
6 · The paper itself

Abstract

Invasive pulmonary aspergillosis (IPA) is an opportunistic fungal infection in patients undergoing chemotherapy for hematological malignancy, hematopoietic stem cell transplant, or other forms of immunosuppression. In this group, Aspergillus infections account for the majority of deaths due to mold pathogens. Although early detection is associated with improved outcomes, current diagnostic regimens lack sensitivity and specificity. Patients undergoing chemotherapy, stem cell transplantation and lung transplantation were enrolled in a multi-site prospective observational trial. Proven and probable IPA cases and matched controls were subjected to discovery proteomics analyses using a biofluid analysis platform, fractionating plasma into reproducible protein and peptide pools. From 556 spots identified by 2D gel electrophoresis, 66 differentially expressed post-translationally modified plasma proteins were identified in the leukemic subgroup only. This protein group was rich in complement components, acute-phase reactants and coagulation factors. Low molecular weight peptides corresponding to abundant plasma proteins were identified. A candidate marker panel of host response (9 plasma proteins, 4 peptides), fungal polysaccharides (galactomannan), and cell wall components (β-D glucan) were selected by statistical filtering for patients with leukemia as a primary underlying diagnosis. Quantitative measurements were developed to qualify the differential expression of the candidate host response proteins using selective reaction monitoring mass spectrometry assays, and then applied to a separate cohort of 57 patients with leukemia. In this verification cohort, a machine learning ensemble-based algorithm, generalized pathseeker (GPS) produced a greater case classification accuracy than galactomannan (GM) or host proteins alone. In conclusion, Integration of host response proteins with GM improves the diagnostic detection of probable IPA in patients undergoing treatment for hematologic malignancy. Upon further validation, early detection of probable IPA in leukemia treatment will provide opportunities for earlier interventions and interventional clinical trials.

Indexed as

AlgorithmsAmino Acid SequenceAntigens, FungalBiomarkersBlood ProteinsCase-Control StudiesCohort StudiesFemaleHumansInvasive Pulmonary AspergillosisLeukemiaMachine LearningMaleMass SpectrometryMiddle AgedModels, BiologicalAntigens, FungalBiomarkersBlood ProteinsPeptides

Identifiers

PMID26581097
PMCPMC4651335
OpenAlexW2175018351

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.