Evidence map›Paper›PMID 26580854›Full record

ArticleInvestigative ophthalmology & visual science2015

The bHLH Transcription Factor NeuroD Governs Photoreceptor Genesis and Regeneration Through Delta-Notch Signaling.

Scott M Taylor, Karen Alvarez-Delfin, Carole J Saade, Jennifer L Thomas, Ryan Thummel, James M Fadool, Peter F Hitchcock

Abstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Independent Mutations in theInternational journal of molecular sciences · 2025
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  7. Review
  8. Article
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  12. Retinal regeneration requires dynamic Notch signaling.Neural regeneration research · 2022
    Review
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  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Notch signalling patterns retinal composition by regulatingDevelopment (Cambridge, England) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Scott M TaylorDepartment of Ophthalmology and Visual Sciences University of Michigan, W. K. Kellogg Eye Center, Ann Arbor, Michigan, United States.
Karen Alvarez-DelfinDepartment of Biological Science, Florida State University, Tallahassee, Florida, United States.
Carole J SaadeDepartment of Biological Science, Florida State University, Tallahassee, Florida, United States.
Jennifer L ThomasDepartments of Anatomy/Cell Biology and Ophthalmology, Wayne State University, Detroit, Michigan, United States.
Ryan ThummelDepartments of Anatomy/Cell Biology and Ophthalmology, Wayne State University, Detroit, Michigan, United States.
James M FadoolDepartment of Biological Science, Florida State University, Tallahassee, Florida, United States.
Peter F HitchcockDepartment of Ophthalmology and Visual Sciences University of Michigan, W. K. Kellogg Eye Center, Ann Arbor, Michigan, United States.

Funding

VIVARIUM MODULEP30EY007003 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Maria Anneke Woodward · 1987 to 2026
$17.6M
RETINAL DEVELOPMENT--DENDRITIC GROWTH SYNAPSER01EY007060 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HITCHCOCK, PETER F · 1987 to 2021
$7.0M
Vision Research Training Program - T32EY013934T32EY013934 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Patrice Elie Fort · 2002 to 2026
$4.2M
Developing Models of Retinal and Eye DefectsR01EY017753 · NEI · FLORIDA STATE UNIVERSITY · PI FADOOL, JAMES M · 2006 to 2010
$1.6M
The role of the bHLH transcription factor NeuroD in regulating photoreceptor regeF32EY023129 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TAYLOR, SCOTT MICHAEL · 2013 to 2014
$123k
Genetics of the photoreceptor cell specificationF31EY020106 · NEI · FLORIDA STATE UNIVERSITY · PI ALVAREZ-DELFIN, KAREN · 2010 to 2010
$32k
NCRR NIH HHS P40 RR01NEI NIH HHS EY017753NEI NIH HHS EY020106NEI NIH HHS F31 EY020106NEI NIH HHS F32 EY023129NEI NIH HHS P30 EY007003NEI NIH HHS R01 EY007060NEI NIH HHS R01 EY017753NEI NIH HHS R01 EY07060NEI NIH HHS T32 EY013934PHS HHS P30EYO7003PHS HHS P30RY004068
6 · The paper itself

Abstract

purposePhotoreceptor genesis in the retina requires precise regulation of progenitor cell competence, cell cycle exit, and differentiation, although information around the mechanisms that govern these events currently is lacking. In zebrafish, the basic helix-loop-helix (bHLH) transcription factor NeuroD governs photoreceptor genesis, but the signaling pathways through which NeuroD functions are unknown. The purpose of this study was to identify these pathways, and during photoreceptor genesis, Notch signaling was investigated as the putative mediator of NeuroD function.

methodsIn embryos, genetic mosaic analysis was used to determine if NeuroD functions is cell- or non-cell-autonomous. Morpholino-induced NeuroD knockdown, CRISPR/Cas9 mutation, and pharmacologic and transgenic approaches were used, followed by in situ hybridization, immunocytochemistry, and quantitative RT-PCR (qRT-PCR), to identify mechanisms through which NeuroD functions. In adults, following photoreceptor ablation and NeuroD knockdown, similar methods as above were used to identify NeuroD function during photoreceptor regeneration.

resultsIn embryos, NeuroD function is non-cell-autonomous, NeuroD knockdown increases Notch pathway gene expression, Notch inhibition rescues the NeuroD knockdown-induced deficiency in cell cycle exit but not photoreceptor maturation, and Notch activation and CRISPR/Cas9 mutation of neurod recapitulate NeuroD knockdown. In adults, NeuroD knockdown prevents cell cycle exit and photoreceptor regeneration and increases Notch pathway gene expression, and Notch inhibition rescues this phenotype.

conclusionsThese data demonstrate that during embryonic development, NeuroD governs photoreceptor genesis via non-cell-autonomous mechanisms and that, during photoreceptor development and regeneration, Notch signaling is a mechanistic link between NeuroD and cell cycle exit. In contrast, during embryonic development, NeuroD governs photoreceptor maturation via mechanisms that are independent of Notch signaling.

Indexed as

Gene Expression Regulation, DevelopmentalRegenerationAnimalsAnimals, Genetically ModifiedBasic Helix-Loop-Helix ProteinsCell DifferentiationCells, CulturedHelix-Loop-Helix MotifsNerve Tissue ProteinsPhotoreceptor CellsReceptors, NotchRNAZebrafishBasic Helix-Loop-Helix ProteinsNerve Tissue ProteinsNeurogenic differentiation factor 1Receptors, NotchRNA

Identifiers

PMID26580854
PMCPMC4654396

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.