Evidence map›Paper›PMID 26580355›Full record

ArticleJournal of chemical theory and computation2014

GEM*: A Molecular Electronic Density-Based Force Field for Molecular Dynamics Simulations.

Robert E Duke, Oleg N Starovoytov, Jean-Philip Piquemal, G Andrés Cisneros

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. The Q-AMOEBA (CF) Polarizable Potential.The journal of physical chemistry letters · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Polarizable Water Potential Derived from a Model Electron Density.Journal of chemical theory and computation · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. LICHEM 1.1: Recent Improvements and New Capabilities.Journal of chemical theory and computation · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Robert E DukeDepartment of Chemistry, Wayne State University , Detroit, Michigan 48202, United States.
Oleg N StarovoytovDepartment of Chemistry, Wayne State University , Detroit, Michigan 48202, United States.
Jean-Philip PiquemalSorbonne Universités , UPMC Univ Paris 06 , UMR 7616 Laboratoire de Chimie Théorique case courrier 137 , 4 place Jussieu 75005, Paris, France.
G Andrés CisnerosDepartment of Chemistry, Wayne State University , Detroit, Michigan 48202, United States.

Funding

Theory and Simulation of DNA Repair Enzymes; Mechanism, Structure and FunctionR01GM108583 · NIGMS · WAYNE STATE UNIVERSITY · PI CISNEROS, GERARDO ANDRES · 2014 to 2022
$2.9M
NIGMS NIH HHS R01 GM108583
6 · The paper itself

Abstract

GEM*, a force field that combines Coulomb and Exchange terms calculated with Hermite Gaussians with the polarization, bonded, and modified van der Waals terms from AMOEBA is presented. GEM* is tested on an initial water model fitted at the same level as AMOEBA. The integrals required for the evaluation of the intermolecular Coulomb interactions are efficiently evaluated by means of reciprocal space methods. The GEM* water model is tested by comparing energies and forces for a series of water oligomers and MD simulations. Timings for GEM* compared to AMOEBA are presented and discussed.

Identifiers

PMID26580355
PMCPMC5207213

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.