Evidence map›Paper›PMID 26580227›Full record

ArticleACS nano2015

Direct Analysis of Gene Synthesis Reactions Using Solid-State Nanopores.

Spencer Carson, Scott T Wick, Peter A Carr, Meni Wanunu, Carlos A Aguilar

Abstract read
In one paragraph

Article in ACS nano, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Nanopore Sensing.Analytical chemistry · 2017
    Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Spencer CarsonDepartment of Physics, Northeastern University , Boston, Massachusetts 02115, United States.
Scott T WickMassachusetts Institute of Technology Lincoln Laboratory, Massachusetts Institute of Technology , 244 Wood Street, Lexington, Massachusetts 02420, United States.
Peter A CarrMassachusetts Institute of Technology Lincoln Laboratory, Massachusetts Institute of Technology , 244 Wood Street, Lexington, Massachusetts 02420, United States.
Meni WanunuDepartment of Physics, Northeastern University , Boston, Massachusetts 02115, United States.
Carlos A AguilarMassachusetts Institute of Technology Lincoln Laboratory, Massachusetts Institute of Technology , 244 Wood Street, Lexington, Massachusetts 02420, United States.

Funding

LCenter for Clinical and Translational Science and TrainingUL1TR001425 · NCATS · UNIVERSITY OF CINCINNATI · PI HEUBI, JAMES E., KISSELA, BRETT M · 2015 to 2024
$37.5M
ANIMAL HUSBANDRY SUPPORT SERVICES FOR NIEHS27304C0002 · NIEHS · 2007 to 2008
$5.0M
Picogram-level DNA sequencing using Nanopores and Zero-Mode WaveguidesR21HG006873 · NHGRI · NORTHEASTERN UNIVERSITY · PI KORLACH, JONAS, WANUNU, MENI · 2012 to 2014
$812k
Role of Mitochondrial CYP2E1 in Chemical Exposure-Driven NeurodegenerationF32ES027306 · NIEHS · DUKE UNIVERSITY · PI HARTMAN, JESSICA HELENE · 2016 to 2018
$171k
Investigation of metabolites related to manganese exposureF31ES027304 · NIEHS · UNIVERSITY OF WASHINGTON · PI BAKER, MARISSA GAYL · 2016 to 2017
$61k
NCATS NIH HHS UL1 TR001425NHGRI NIH HHS R21 HG006873NHGRI NIH HHS R21-HG006873NIEHS NIH HHS 27304C0002NIEHS NIH HHS 27306C0002
6 · The paper itself

Abstract

Synthetic nucleic acids offer rich potential to understand and engineer new cellular functions, yet an unresolved limitation in their production and usage is deleterious products, which restrict design complexity and add cost. Herein, we employ a solid-state nanopore to differentiate molecules of a gene synthesis reaction into categories of correct and incorrect assemblies. This new method offers a solution that provides information on gene synthesis reactions in near-real time with higher complexity and lower costs. This advance can permit insights into gene synthesis reactions such as kinetics monitoring, real-time tuning, and optimization of factors that drive reaction-to-reaction variations as well as open venues between nanopore-sensing, synthetic biology, and DNA nanotechnology.

Indexed as

NanoporesDNAGenesHIV ProteaseKineticsNanotechnologySequence Analysis, DNASynthetic BiologyDNAHIV ProteaseDNAHIV proteasesingle moleculesynthetic biologytranslocation

Identifiers

PMID26580227
PMCPMC5154552

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.