Evidence map›Paper›PMID 26580075›Full record

ArticlePloS one2015

Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression.

Joanna E Kowalczyk, Birgit S Gruben, Evy Battaglia, Ad Wiebenga, Eline Majoor, Ronald P de Vries

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 51 citations in OpenAlex.

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  5. Enzymatic Treatments for Biosolids: An Outlook and Recent Trends.International journal of environmental research and public health · 2023
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  7. The Sugar Metabolic Model ofJournal of fungi (Basel, Switzerland) · 2022
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  11. The Transcription FactorFrontiers in microbiology · 2022
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  12. Transcription Factors in the FungusJournal of fungi (Basel, Switzerland) · 2021
    Article
  13. Article
  14. Transcriptional Profiling ofFrontiers in microbiology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Biotechnology for biofuels · 2019
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Joanna E KowalczykFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, Utrecht, the Netherlands.
Birgit S GrubenFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, Utrecht, the Netherlands.
Evy BattagliaFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, Utrecht, the Netherlands.
Ad WiebengaFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, Utrecht, the Netherlands.
Eline MajoorFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, Utrecht, the Netherlands.
Ronald P de VriesFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, Utrecht, the Netherlands.
Utrecht University · NLWesterdijk Fungal Biodiversity Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Aspergillus nidulans, the xylanolytic regulator XlnR and the arabinanolytic regulator AraR co-regulate pentose catabolism. In nature, the pentose sugars D-xylose and L-arabinose are both main building blocks of the polysaccharide arabinoxylan. In pectin and arabinogalactan, these two monosaccharides are found in combination with D-galactose. GalR, the regulator that responds to the presence of D-galactose, regulates the D-galactose catabolic pathway. In this study we investigated the possible interaction between XlnR, AraR and GalR in pentose and/or D-galactose catabolism in A. nidulans. Growth phenotypes and metabolic gene expression profiles were studied in single, double and triple disruptant A. nidulans strains of the genes encoding these paralogous transcription factors. Our results demonstrate that AraR and XlnR not only control pentose catabolic pathway genes, but also genes of the oxido-reductive D-galactose catabolic pathway. This suggests an interaction between three transcriptional regulators in D-galactose catabolism. Conversely, GalR is not involved in regulation of pentose catabolism, but controls only genes of the oxido-reductive D-galactose catabolic pathway.

Indexed as

Epistasis, GeneticGene Expression Regulation, FungalAmino Acid SequenceArabinoseAspergillus nidulansEscherichia coli ProteinsFungal ProteinsGalactoseGene Expression ProfilingMolecular Sequence DataPhenotypeRepressor ProteinsSequence AlignmentSequence Homology, Amino AcidSignal TransductionTrans-ActivatorsArabinoseEscherichia coli ProteinsFungal ProteinsGalactoseGalactose repressor proteinsRepressor ProteinsTrans-ActivatorsXlnR protein, AspergillusXylose

Identifiers

PMID26580075
PMCPMC4651341
OpenAlexW2176413967

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.