Evidence map›Paper›PMID 26579135›Full record

ArticleFrontiers in plant science2015

Distribution of circular proteins in plants: large-scale mapping of cyclotides in the Violaceae.

Robert Burman, Mariamawit Y Yeshak, Sonny Larsson, David J Craik, K Johan Rosengren, Ulf Göransson

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 75 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Robert BurmanDivision of Pharmacognosy, Department of Medicinal Chemistry, Uppsala University Uppsala, Sweden.
Mariamawit Y YeshakDivision of Pharmacognosy, Department of Medicinal Chemistry, Uppsala University Uppsala, Sweden ; Department of Pharmacognosy, School of Pharmacy, Addis Ababa University Addis Ababa, Ethiopia.
Sonny LarssonDivision of Pharmacognosy, Department of Medicinal Chemistry, Uppsala University Uppsala, Sweden.
David J CraikCraik Lab, Chemistry and Structural Biology Division, Institute for Molecular Bioscience, The University of Queensland Brisbane, QLD, Australia.
K Johan RosengrenDivision of Pharmacognosy, Department of Medicinal Chemistry, Uppsala University Uppsala, Sweden ; Laboratory for Peptide Structural Biology, School of Biomedical Sciences, The University of Queensland Brisbane, QLD, Australia.
Ulf GöranssonDivision of Pharmacognosy, Department of Medicinal Chemistry, Uppsala University Uppsala, Sweden.
Uppsala University · SEUniversity of Queensland · AUAddis Ababa University · ET

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the last decade there has been increasing interest in small circular proteins found in plants of the violet family (Violaceae). These so-called cyclotides consist of a circular chain of approximately 30 amino acids, including six cysteines forming three disulfide bonds, arranged in a cyclic cystine knot (CCK) motif. In this study we map the occurrence and distribution of cyclotides throughout the Violaceae. Plant material was obtained from herbarium sheets containing samples up to 200 years of age. Even the oldest specimens contained cyclotides in the preserved leaves, with no degradation products observable, confirming their place as one of the most stable proteins in nature. Over 200 samples covering 17 of the 23-31 genera in Violaceae were analyzed, and cyclotides were positively identified in 150 species. Each species contained a unique set of between one and 25 cyclotides, with many exclusive to individual plant species. We estimate the number of different cyclotides in the Violaceae to be 5000-25,000, and propose that cyclotides are ubiquitous among all Violaceae species. Twelve new cyclotides from six phylogenetically dispersed genera were sequenced. Furthermore, the first glycosylated derivatives of cyclotides were identified and characterized, further increasing the diversity and complexity of this unique protein family.

Indexed as

cyclotideplant peptideplant proteinstable proteinsViolaceae

Identifiers

PMID26579135
PMCPMC4621522
OpenAlexW322694108

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.