Evidence map›Paper›PMID 26579095›Full record

ArticleFrontiers in microbiology2015

Diversity and structure of soil bacterial communities in the Fildes Region (maritime Antarctica) as revealed by 454 pyrosequencing.

Neng Fei Wang, Tao Zhang, Fang Zhang, En Tao Wang, Jian Feng He, Hui Ding, Bo Tao Zhang, Jie Liu, Xiang Bin Ran, Jia Ye Zang

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Neng Fei WangKey Lab of Marine Bioactive Substances, The First Institute of Oceanography, State Oceanic Administration Qingdao, China.
Tao ZhangInstitute of Medicinal Biotechnology, Chinese Academy of Medical Sciences Beijing, China.
Fang ZhangPolar Research Institute of China Shanghai, China.
En Tao WangDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional Mexico, Mexico.
Jian Feng HePolar Research Institute of China Shanghai, China.
Hui DingChemical Engineering Institute, Qingdao University Qingdao, China.
Bo Tao ZhangChemical Engineering Institute, Qingdao University Qingdao, China.
Jie LiuDepartment of Bioengineering and Biotechnology, Qingdao University of Science and Technology Qingdao, China.
Xiang Bin RanKey Lab of Marine Bioactive Substances, The First Institute of Oceanography, State Oceanic Administration Qingdao, China.
Jia Ye ZangKey Lab of Marine Bioactive Substances, The First Institute of Oceanography, State Oceanic Administration Qingdao, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study assessed the diversity and composition of bacterial communities in four different soils (human-, penguin-, seal-colony impacted soils and pristine soil) in the Fildes Region (King George Island, Antarctica) using 454 pyrosequencing with bacterial-specific primers targeting the 16S rRNA gene. Proteobacteria, Actinobacteria, Acidobacteria, and Verrucomicrobia were abundant phyla in almost all the soil samples. The four types of soils were significantly different in geochemical properties and bacterial community structure. Thermotogae, Cyanobacteria, Fibrobacteres, Deinococcus-Thermus, and Chlorobi obviously varied in their abundance among the 4 soil types. Considering all the samples together, members of the genera Gaiella, Chloracidobacterium, Nitrospira, Polaromonas, Gemmatimonas, Sphingomonas, and Chthoniobacter were found to predominate, whereas members of the genera Chamaesiphon, Herbaspirillum, Hirschia, Nevskia, Nitrosococcus, Rhodococcus, Rhodomicrobium, and Xanthomonas varied obviously in their abundance among the four soil types. Distance-based redundancy analysis revealed that pH (p < 0.01), phosphate phosphorus (p < 0.01), organic carbon (p < 0.05), and organic nitrogen (p < 0.05) were the most significant factors that correlated with the community distribution of soil bacteria. To our knowledge, this is the first study to explore the soil bacterial communities in human-, penguin-, and seal- colony impacted soils from ice-free areas in maritime Antarctica using high-throughput pyrosequencing.

Indexed as

16S rRNA geneantarcticabacterial communitiesmolecular ecologysoil geochemical property

Identifiers

PMID26579095
PMCPMC4623505

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.